Atlas of Genetics and Cytogenetics in Oncology and Haematology


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TCTEX1D2 (Tctex1 domain containing 2)

Identity

Alias_symbol (synonym)MGC33212
Other aliasSRTD17
HGNC (Hugo) TCTEX1D2
LocusID (NCBI) 255758
Atlas_Id 74594
Location 3q29  [Link to chromosome band 3q29]
Location_base_pair Starts at 196291219 and ends at 196318294 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
GRB2 (17q25.1) / TCTEX1D2 (3q29)MROH1 (8q24.3) / TCTEX1D2 (3q29)RBCK1 (20p13) / TCTEX1D2 (3q29)
SENP5 (3q29) / TCTEX1D2 (3q29)TCTEX1D2 (3q29) / PRMT7 (16q22.1)TCTEX1D2 (3q29) / TCTEX1D2 (3q29)
TFRC (3q29) / TCTEX1D2 (3q29)TFRC TCTEX1D2SENP5 TCTEX1D2
GRB2 TCTEX1D2HEATR7A TCTEX1D2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TCTEX1D2   28482
Cards
Entrez_Gene (NCBI)TCTEX1D2  255758  Tctex1 domain containing 2
AliasesSRTD17
GeneCards (Weizmann)TCTEX1D2
Ensembl hg19 (Hinxton)ENSG00000213123 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000213123 [Gene_View]  chr3:196291219-196318294 [Contig_View]  TCTEX1D2 [Vega]
ICGC DataPortalENSG00000213123
TCGA cBioPortalTCTEX1D2
AceView (NCBI)TCTEX1D2
Genatlas (Paris)TCTEX1D2
WikiGenes255758
SOURCE (Princeton)TCTEX1D2
Genetics Home Reference (NIH)TCTEX1D2
Genomic and cartography
GoldenPath hg38 (UCSC)TCTEX1D2  -     chr3:196291219-196318294 -  3q29   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TCTEX1D2  -     3q29   [Description]    (hg19-Feb_2009)
EnsemblTCTEX1D2 - 3q29 [CytoView hg19]  TCTEX1D2 - 3q29 [CytoView hg38]
Mapping of homologs : NCBITCTEX1D2 [Mapview hg19]  TCTEX1D2 [Mapview hg38]
OMIM617353   617405   
Gene and transcription
Genbank (Entrez)AI298516 BC015348 BC021177 BM548106 BM983853
RefSeq transcript (Entrez)NM_152773
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TCTEX1D2
Cluster EST : UnigeneHs.733180 [ NCBI ]
CGAP (NCI)Hs.733180
Alternative Splicing GalleryENSG00000213123
Gene ExpressionTCTEX1D2 [ NCBI-GEO ]   TCTEX1D2 [ EBI - ARRAY_EXPRESS ]   TCTEX1D2 [ SEEK ]   TCTEX1D2 [ MEM ]
Gene Expression Viewer (FireBrowse)TCTEX1D2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)255758
GTEX Portal (Tissue expression)TCTEX1D2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WW35   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WW35  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WW35
Splice isoforms : SwissVarQ8WW35
PhosPhoSitePlusQ8WW35
Domains : Interpro (EBI)Tctex   
Domain families : Pfam (Sanger)Tctex-1 (PF03645)   
Domain families : Pfam (NCBI)pfam03645   
Conserved Domain (NCBI)TCTEX1D2
DMDM Disease mutations255758
Blocks (Seattle)TCTEX1D2
SuperfamilyQ8WW35
Human Protein AtlasENSG00000213123
Peptide AtlasQ8WW35
HPRD14554
IPIIPI00103222   IPI00927622   IPI00927885   IPI00924710   
Protein Interaction databases
DIP (DOE-UCLA)Q8WW35
IntAct (EBI)Q8WW35
FunCoupENSG00000213123
BioGRIDTCTEX1D2
STRING (EMBL)TCTEX1D2
ZODIACTCTEX1D2
Ontologies - Pathways
QuickGOQ8WW35
Ontology : AmiGOspindle pole  protein binding  centrosome  cytoplasmic dynein complex  axoneme  interphase microtubule organizing center  dynein intermediate chain binding  cilium assembly  ciliary base  regulation of cilium assembly  regulation of intraciliary retrograde transport  
Ontology : EGO-EBIspindle pole  protein binding  centrosome  cytoplasmic dynein complex  axoneme  interphase microtubule organizing center  dynein intermediate chain binding  cilium assembly  ciliary base  regulation of cilium assembly  regulation of intraciliary retrograde transport  
NDEx NetworkTCTEX1D2
Atlas of Cancer Signalling NetworkTCTEX1D2
Wikipedia pathwaysTCTEX1D2
Orthology - Evolution
OrthoDB255758
GeneTree (enSembl)ENSG00000213123
Phylogenetic Trees/Animal Genes : TreeFamTCTEX1D2
HOVERGENQ8WW35
HOGENOMQ8WW35
Homologs : HomoloGeneTCTEX1D2
Homology/Alignments : Family Browser (UCSC)TCTEX1D2
Gene fusions - Rearrangements
Fusion: TCGATFRC TCTEX1D2
Fusion: TCGASENP5 TCTEX1D2
Fusion: TCGAGRB2 TCTEX1D2
Fusion: TCGAHEATR7A TCTEX1D2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTCTEX1D2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TCTEX1D2
dbVarTCTEX1D2
ClinVarTCTEX1D2
1000_GenomesTCTEX1D2 
Exome Variant ServerTCTEX1D2
ExAC (Exome Aggregation Consortium)TCTEX1D2 (select the gene name)
Genetic variants : HAPMAP255758
Genomic Variants (DGV)TCTEX1D2 [DGVbeta]
DECIPHERTCTEX1D2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTCTEX1D2 
Mutations
ICGC Data PortalTCTEX1D2 
TCGA Data PortalTCTEX1D2 
Broad Tumor PortalTCTEX1D2
OASIS PortalTCTEX1D2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTCTEX1D2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTCTEX1D2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TCTEX1D2
DgiDB (Drug Gene Interaction Database)TCTEX1D2
DoCM (Curated mutations)TCTEX1D2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TCTEX1D2 (select a term)
intoGenTCTEX1D2
Cancer3DTCTEX1D2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617353    617405   
Orphanet
MedgenTCTEX1D2
Genetic Testing Registry TCTEX1D2
NextProtQ8WW35 [Medical]
TSGene255758
GENETestsTCTEX1D2
Target ValidationTCTEX1D2
Huge Navigator TCTEX1D2 [HugePedia]
snp3D : Map Gene to Disease255758
BioCentury BCIQTCTEX1D2
ClinGenTCTEX1D2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD255758
Chemical/Pharm GKB GenePA162405435
Clinical trialTCTEX1D2
Miscellaneous
canSAR (ICR)TCTEX1D2 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTCTEX1D2
EVEXTCTEX1D2
GoPubMedTCTEX1D2
iHOPTCTEX1D2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:45:09 CEST 2017

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