Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TCTEX1D4 (Tctex1 domain containing 4)

Identity

Other alias-
HGNC (Hugo) TCTEX1D4
LocusID (NCBI) 343521
Atlas_Id 54696
Location 1p34.1  [Link to chromosome band 1p34]
Location_base_pair Starts at 45271582 and ends at 45272957 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ARHGEF16 (1p36.32) / TCTEX1D4 (1p34.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  Lung: Translocations in Adenocarcinoma


External links

Nomenclature
HGNC (Hugo)TCTEX1D4   32315
Cards
Entrez_Gene (NCBI)TCTEX1D4  343521  Tctex1 domain containing 4
Aliases
GeneCards (Weizmann)TCTEX1D4
Ensembl hg19 (Hinxton)ENSG00000188396 [Gene_View]  chr1:45271582-45272957 [Contig_View]  TCTEX1D4 [Vega]
Ensembl hg38 (Hinxton)ENSG00000188396 [Gene_View]  chr1:45271582-45272957 [Contig_View]  TCTEX1D4 [Vega]
ICGC DataPortalENSG00000188396
TCGA cBioPortalTCTEX1D4
AceView (NCBI)TCTEX1D4
Genatlas (Paris)TCTEX1D4
WikiGenes343521
SOURCE (Princeton)TCTEX1D4
Genetics Home Reference (NIH)TCTEX1D4
Genomic and cartography
GoldenPath hg19 (UCSC)TCTEX1D4  -     chr1:45271582-45272957 -  1p34.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TCTEX1D4  -     1p34.1   [Description]    (hg38-Dec_2013)
EnsemblTCTEX1D4 - 1p34.1 [CytoView hg19]  TCTEX1D4 - 1p34.1 [CytoView hg38]
Mapping of homologs : NCBITCTEX1D4 [Mapview hg19]  TCTEX1D4 [Mapview hg38]
OMIM611713   
Gene and transcription
Genbank (Entrez)BC092499 DQ132441
RefSeq transcript (Entrez)NM_001013632
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_032977 NW_004929290
Consensus coding sequences : CCDS (NCBI)TCTEX1D4
Cluster EST : UnigeneHs.585137 [ NCBI ]
CGAP (NCI)Hs.585137
Alternative Splicing GalleryENSG00000188396
Gene ExpressionTCTEX1D4 [ NCBI-GEO ]   TCTEX1D4 [ EBI - ARRAY_EXPRESS ]   TCTEX1D4 [ SEEK ]   TCTEX1D4 [ MEM ]
Gene Expression Viewer (FireBrowse)TCTEX1D4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)343521
GTEX Portal (Tissue expression)TCTEX1D4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5JR98   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5JR98  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5JR98
Splice isoforms : SwissVarQ5JR98
PhosPhoSitePlusQ5JR98
Domains : Interpro (EBI)Tctex   
Domain families : Pfam (Sanger)Tctex-1 (PF03645)   
Domain families : Pfam (NCBI)pfam03645   
Conserved Domain (NCBI)TCTEX1D4
DMDM Disease mutations343521
Blocks (Seattle)TCTEX1D4
SuperfamilyQ5JR98
Human Protein AtlasENSG00000188396
Peptide AtlasQ5JR98
HPRD15762
IPIIPI00259372   
Protein Interaction databases
DIP (DOE-UCLA)Q5JR98
IntAct (EBI)Q5JR98
FunCoupENSG00000188396
BioGRIDTCTEX1D4
STRING (EMBL)TCTEX1D4
ZODIACTCTEX1D4
Ontologies - Pathways
QuickGOQ5JR98
Ontology : AmiGOacrosomal vesicle  protein binding  nucleus  microtubule organizing center  axoneme  protein phosphatase 1 binding  sperm flagellum  
Ontology : EGO-EBIacrosomal vesicle  protein binding  nucleus  microtubule organizing center  axoneme  protein phosphatase 1 binding  sperm flagellum  
NDEx NetworkTCTEX1D4
Atlas of Cancer Signalling NetworkTCTEX1D4
Wikipedia pathwaysTCTEX1D4
Orthology - Evolution
OrthoDB343521
GeneTree (enSembl)ENSG00000188396
Phylogenetic Trees/Animal Genes : TreeFamTCTEX1D4
HOVERGENQ5JR98
HOGENOMQ5JR98
Homologs : HomoloGeneTCTEX1D4
Homology/Alignments : Family Browser (UCSC)TCTEX1D4
Gene fusions - Rearrangements
Fusion : MitelmanARHGEF16/TCTEX1D4 [1p36.32/1p34.1]  [t(1;1)(p34;p36)]  
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTCTEX1D4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TCTEX1D4
dbVarTCTEX1D4
ClinVarTCTEX1D4
1000_GenomesTCTEX1D4 
Exome Variant ServerTCTEX1D4
ExAC (Exome Aggregation Consortium)TCTEX1D4 (select the gene name)
Genetic variants : HAPMAP343521
Genomic Variants (DGV)TCTEX1D4 [DGVbeta]
DECIPHER (Syndromes)1:45271582-45272957  ENSG00000188396
CONAN: Copy Number AnalysisTCTEX1D4 
Mutations
ICGC Data PortalTCTEX1D4 
TCGA Data PortalTCTEX1D4 
Broad Tumor PortalTCTEX1D4
OASIS PortalTCTEX1D4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTCTEX1D4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTCTEX1D4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TCTEX1D4
DgiDB (Drug Gene Interaction Database)TCTEX1D4
DoCM (Curated mutations)TCTEX1D4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TCTEX1D4 (select a term)
intoGenTCTEX1D4
Cancer3DTCTEX1D4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611713   
Orphanet
MedgenTCTEX1D4
Genetic Testing Registry TCTEX1D4
NextProtQ5JR98 [Medical]
TSGene343521
GENETestsTCTEX1D4
Huge Navigator TCTEX1D4 [HugePedia]
snp3D : Map Gene to Disease343521
BioCentury BCIQTCTEX1D4
ClinGenTCTEX1D4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD343521
Chemical/Pharm GKB GenePA162405436
Clinical trialTCTEX1D4
Miscellaneous
canSAR (ICR)TCTEX1D4 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTCTEX1D4
EVEXTCTEX1D4
GoPubMedTCTEX1D4
iHOPTCTEX1D4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Mar 30 15:22:06 CEST 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.