Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TCTN1 (tectonic family member 1)

Identity

Alias_symbol (synonym)FLJ21127
TECT1
JBTS13
Other alias
HGNC (Hugo) TCTN1
LocusID (NCBI) 79600
Atlas_Id 55624
Location 12q24.11  [Link to chromosome band 12q24]
Location_base_pair Starts at 110614027 and ends at 110649131 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
S100B (21q22.3) / TCTN1 (12q24.11)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TCTN1   26113
Cards
Entrez_Gene (NCBI)TCTN1  79600  tectonic family member 1
AliasesJBTS13; TECT1
GeneCards (Weizmann)TCTN1
Ensembl hg19 (Hinxton)ENSG00000204852 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000204852 [Gene_View]  chr12:110614027-110649131 [Contig_View]  TCTN1 [Vega]
ICGC DataPortalENSG00000204852
TCGA cBioPortalTCTN1
AceView (NCBI)TCTN1
Genatlas (Paris)TCTN1
WikiGenes79600
SOURCE (Princeton)TCTN1
Genetics Home Reference (NIH)TCTN1
Genomic and cartography
GoldenPath hg38 (UCSC)TCTN1  -     chr12:110614027-110649131 +  12q24.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TCTN1  -     12q24.11   [Description]    (hg19-Feb_2009)
EnsemblTCTN1 - 12q24.11 [CytoView hg19]  TCTN1 - 12q24.11 [CytoView hg38]
Mapping of homologs : NCBITCTN1 [Mapview hg19]  TCTN1 [Mapview hg38]
OMIM609863   614173   
Gene and transcription
Genbank (Entrez)AK024780 AK055891 AK092775 AK128417 AK295514
RefSeq transcript (Entrez)NM_001082537 NM_001082538 NM_001173975 NM_001173976 NM_001319680 NM_001319681 NM_001319682 NM_024549
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TCTN1
Cluster EST : UnigeneHs.211511 [ NCBI ]
CGAP (NCI)Hs.211511
Alternative Splicing GalleryENSG00000204852
Gene ExpressionTCTN1 [ NCBI-GEO ]   TCTN1 [ EBI - ARRAY_EXPRESS ]   TCTN1 [ SEEK ]   TCTN1 [ MEM ]
Gene Expression Viewer (FireBrowse)TCTN1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79600
GTEX Portal (Tissue expression)TCTN1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ2MV58   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ2MV58  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ2MV58
Splice isoforms : SwissVarQ2MV58
PhosPhoSitePlusQ2MV58
Domains : Interpro (EBI)DUF1619   
Domain families : Pfam (Sanger)DUF1619 (PF07773)   
Domain families : Pfam (NCBI)pfam07773   
Conserved Domain (NCBI)TCTN1
DMDM Disease mutations79600
Blocks (Seattle)TCTN1
SuperfamilyQ2MV58
Human Protein AtlasENSG00000204852
Peptide AtlasQ2MV58
HPRD08636
IPI###############################################################################################################################################################################################################################################################   
Protein Interaction databases
DIP (DOE-UCLA)Q2MV58
IntAct (EBI)Q2MV58
FunCoupENSG00000204852
BioGRIDTCTN1
STRING (EMBL)TCTN1
ZODIACTCTN1
Ontologies - Pathways
QuickGOQ2MV58
Ontology : AmiGOin utero embryonic development  neural tube formation  extracellular space  cytosol  cytoskeleton  regulation of smoothened signaling pathway  membrane  somatic motor neuron differentiation  telencephalon development  dorsal/ventral neural tube patterning  central nervous system interneuron axonogenesis  MKS complex  cilium assembly  ciliary basal body docking  protein localization to ciliary transition zone  
Ontology : EGO-EBIin utero embryonic development  neural tube formation  extracellular space  cytosol  cytoskeleton  regulation of smoothened signaling pathway  membrane  somatic motor neuron differentiation  telencephalon development  dorsal/ventral neural tube patterning  central nervous system interneuron axonogenesis  MKS complex  cilium assembly  ciliary basal body docking  protein localization to ciliary transition zone  
NDEx NetworkTCTN1
Atlas of Cancer Signalling NetworkTCTN1
Wikipedia pathwaysTCTN1
Orthology - Evolution
OrthoDB79600
GeneTree (enSembl)ENSG00000204852
Phylogenetic Trees/Animal Genes : TreeFamTCTN1
HOVERGENQ2MV58
HOGENOMQ2MV58
Homologs : HomoloGeneTCTN1
Homology/Alignments : Family Browser (UCSC)TCTN1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTCTN1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TCTN1
dbVarTCTN1
ClinVarTCTN1
1000_GenomesTCTN1 
Exome Variant ServerTCTN1
ExAC (Exome Aggregation Consortium)TCTN1 (select the gene name)
Genetic variants : HAPMAP79600
Genomic Variants (DGV)TCTN1 [DGVbeta]
DECIPHERTCTN1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTCTN1 
Mutations
ICGC Data PortalTCTN1 
TCGA Data PortalTCTN1 
Broad Tumor PortalTCTN1
OASIS PortalTCTN1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTCTN1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTCTN1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TCTN1
DgiDB (Drug Gene Interaction Database)TCTN1
DoCM (Curated mutations)TCTN1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TCTN1 (select a term)
intoGenTCTN1
Cancer3DTCTN1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609863    614173   
Orphanet1022   
MedgenTCTN1
Genetic Testing Registry TCTN1
NextProtQ2MV58 [Medical]
TSGene79600
GENETestsTCTN1
Huge Navigator TCTN1 [HugePedia]
snp3D : Map Gene to Disease79600
BioCentury BCIQTCTN1
ClinGenTCTN1 (curated)
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79600
Chemical/Pharm GKB GenePA162405437
Clinical trialTCTN1
Miscellaneous
canSAR (ICR)TCTN1 (select the gene name)
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTCTN1
EVEXTCTN1
GoPubMedTCTN1
iHOPTCTN1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri May 19 12:40:36 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.