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TCTN2 (tectonic family member 2)

Identity

Alias_namesC12orf38
chromosome 12 open reading frame 38
Alias_symbol (synonym)FLJ12975
TECT2
MKS8
JBTS24
Other alias
HGNC (Hugo) TCTN2
LocusID (NCBI) 79867
Atlas_Id 74596
Location 12q24.31  [Link to chromosome band 12q24]
Location_base_pair Starts at 123671113 and ends at 123708403 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
TCTN2 (12q24.31) / TMEM62 (15q15.2)TCTN2 (12q24.31) / WNK1 (12p13.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TCTN2   25774
Cards
Entrez_Gene (NCBI)TCTN2  79867  tectonic family member 2
AliasesC12orf38; JBTS24; MKS8; TECT2
GeneCards (Weizmann)TCTN2
Ensembl hg19 (Hinxton)ENSG00000168778 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000168778 [Gene_View]  chr12:123671113-123708403 [Contig_View]  TCTN2 [Vega]
ICGC DataPortalENSG00000168778
TCGA cBioPortalTCTN2
AceView (NCBI)TCTN2
Genatlas (Paris)TCTN2
WikiGenes79867
SOURCE (Princeton)TCTN2
Genetics Home Reference (NIH)TCTN2
Genomic and cartography
GoldenPath hg38 (UCSC)TCTN2  -     chr12:123671113-123708403 +  12q24.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TCTN2  -     12q24.31   [Description]    (hg19-Feb_2009)
EnsemblTCTN2 - 12q24.31 [CytoView hg19]  TCTN2 - 12q24.31 [CytoView hg38]
Mapping of homologs : NCBITCTN2 [Mapview hg19]  TCTN2 [Mapview hg38]
OMIM613846   613885   616654   
Gene and transcription
Genbank (Entrez)AK023037 AK056924 AK292153 BC009112 BM997327
RefSeq transcript (Entrez)NM_001143850 NM_024809
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TCTN2
Cluster EST : UnigeneHs.167165 [ NCBI ]
CGAP (NCI)Hs.167165
Alternative Splicing GalleryENSG00000168778
Gene ExpressionTCTN2 [ NCBI-GEO ]   TCTN2 [ EBI - ARRAY_EXPRESS ]   TCTN2 [ SEEK ]   TCTN2 [ MEM ]
Gene Expression Viewer (FireBrowse)TCTN2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79867
GTEX Portal (Tissue expression)TCTN2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96GX1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96GX1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96GX1
Splice isoforms : SwissVarQ96GX1
PhosPhoSitePlusQ96GX1
Domains : Interpro (EBI)DUF1619   
Domain families : Pfam (Sanger)DUF1619 (PF07773)   
Domain families : Pfam (NCBI)pfam07773   
Conserved Domain (NCBI)TCTN2
DMDM Disease mutations79867
Blocks (Seattle)TCTN2
SuperfamilyQ96GX1
Human Protein AtlasENSG00000168778
Peptide AtlasQ96GX1
HPRD07805
IPIIPI00074256   IPI00742851   IPI01013762   
Protein Interaction databases
DIP (DOE-UCLA)Q96GX1
IntAct (EBI)Q96GX1
FunCoupENSG00000168778
BioGRIDTCTN2
STRING (EMBL)TCTN2
ZODIACTCTN2
Ontologies - Pathways
QuickGOQ96GX1
Ontology : AmiGOcytoplasm  cytoskeleton  smoothened signaling pathway  integral component of membrane  MKS complex  ciliary membrane  cilium assembly  ciliary basal body docking  
Ontology : EGO-EBIcytoplasm  cytoskeleton  smoothened signaling pathway  integral component of membrane  MKS complex  ciliary membrane  cilium assembly  ciliary basal body docking  
NDEx NetworkTCTN2
Atlas of Cancer Signalling NetworkTCTN2
Wikipedia pathwaysTCTN2
Orthology - Evolution
OrthoDB79867
GeneTree (enSembl)ENSG00000168778
Phylogenetic Trees/Animal Genes : TreeFamTCTN2
HOVERGENQ96GX1
HOGENOMQ96GX1
Homologs : HomoloGeneTCTN2
Homology/Alignments : Family Browser (UCSC)TCTN2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTCTN2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TCTN2
dbVarTCTN2
ClinVarTCTN2
1000_GenomesTCTN2 
Exome Variant ServerTCTN2
ExAC (Exome Aggregation Consortium)TCTN2 (select the gene name)
Genetic variants : HAPMAP79867
Genomic Variants (DGV)TCTN2 [DGVbeta]
DECIPHERTCTN2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTCTN2 
Mutations
ICGC Data PortalTCTN2 
TCGA Data PortalTCTN2 
Broad Tumor PortalTCTN2
OASIS PortalTCTN2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTCTN2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTCTN2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TCTN2
DgiDB (Drug Gene Interaction Database)TCTN2
DoCM (Curated mutations)TCTN2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TCTN2 (select a term)
intoGenTCTN2
Cancer3DTCTN2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613846    613885    616654   
Orphanet280    1022   
MedgenTCTN2
Genetic Testing Registry TCTN2
NextProtQ96GX1 [Medical]
TSGene79867
GENETestsTCTN2
Huge Navigator TCTN2 [HugePedia]
snp3D : Map Gene to Disease79867
BioCentury BCIQTCTN2
ClinGenTCTN2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79867
Chemical/Pharm GKB GenePA162405472
Clinical trialTCTN2
Miscellaneous
canSAR (ICR)TCTN2 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTCTN2
EVEXTCTN2
GoPubMedTCTN2
iHOPTCTN2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 11:57:39 CEST 2017

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