Atlas of Genetics and Cytogenetics in Oncology and Haematology

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TCTN3 (tectonic family member 3)

Identity

Alias_namesC10orf61
chromosome 10 open reading frame 61
Alias_symbol (synonym)DKFZP564D116
TECT3
JBTS18
Other aliasOFD4
HGNC (Hugo) TCTN3
LocusID (NCBI) 26123
Atlas_Id 74597
Location 10q24.1  [Link to chromosome band 10q24]
Location_base_pair Starts at 95663396 and ends at 95694143 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ENTPD5 (14q24.3) / TCTN3 (10q24.1)SPOCK1 (5q31.2) / TCTN3 (10q24.1)TCTN3 (10q24.1) / SLC4A8 (12q13.13)
TCTN3 (10q24.1) / WWOX (16q23.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)TCTN3   24519
Cards
Entrez_Gene (NCBI)TCTN3  26123  tectonic family member 3
AliasesC10orf61; JBTS18; OFD4; TECT3
GeneCards (Weizmann)TCTN3
Ensembl hg19 (Hinxton)ENSG00000119977 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000119977 [Gene_View]  chr10:95663396-95694143 [Contig_View]  TCTN3 [Vega]
ICGC DataPortalENSG00000119977
TCGA cBioPortalTCTN3
AceView (NCBI)TCTN3
Genatlas (Paris)TCTN3
WikiGenes26123
SOURCE (Princeton)TCTN3
Genetics Home Reference (NIH)TCTN3
Genomic and cartography
GoldenPath hg38 (UCSC)TCTN3  -     chr10:95663396-95694143 -  10q24.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TCTN3  -     10q24.1   [Description]    (hg19-Feb_2009)
EnsemblTCTN3 - 10q24.1 [CytoView hg19]  TCTN3 - 10q24.1 [CytoView hg38]
Mapping of homologs : NCBITCTN3 [Mapview hg19]  TCTN3 [Mapview hg38]
OMIM258860   613847   614815   
Gene and transcription
Genbank (Entrez)AI375376 AK075357 AK098295 AK128834 AK299141
RefSeq transcript (Entrez)NM_001143973 NM_015631
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TCTN3
Cluster EST : UnigeneHs.438991 [ NCBI ]
CGAP (NCI)Hs.438991
Alternative Splicing GalleryENSG00000119977
Gene ExpressionTCTN3 [ NCBI-GEO ]   TCTN3 [ EBI - ARRAY_EXPRESS ]   TCTN3 [ SEEK ]   TCTN3 [ MEM ]
Gene Expression Viewer (FireBrowse)TCTN3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)26123
GTEX Portal (Tissue expression)TCTN3
Human Protein AtlasENSG00000119977-TCTN3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6NUS6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6NUS6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6NUS6
Splice isoforms : SwissVarQ6NUS6
PhosPhoSitePlusQ6NUS6
Domains : Interpro (EBI)DUF1619   
Domain families : Pfam (Sanger)DUF1619 (PF07773)   
Domain families : Pfam (NCBI)pfam07773   
Conserved Domain (NCBI)TCTN3
DMDM Disease mutations26123
Blocks (Seattle)TCTN3
SuperfamilyQ6NUS6
Human Protein Atlas [tissue]ENSG00000119977-TCTN3 [tissue]
Peptide AtlasQ6NUS6
HPRD12582
IPIIPI00737059   IPI00413289   IPI00853206   IPI00910042   IPI00924837   IPI00878596   
Protein Interaction databases
DIP (DOE-UCLA)Q6NUS6
IntAct (EBI)Q6NUS6
FunCoupENSG00000119977
BioGRIDTCTN3
STRING (EMBL)TCTN3
ZODIACTCTN3
Ontologies - Pathways
QuickGOQ6NUS6
Ontology : AmiGOapoptotic process  smoothened signaling pathway  integral component of membrane  ciliary membrane  cilium assembly  extracellular exosome  ciliary basal body docking  
Ontology : EGO-EBIapoptotic process  smoothened signaling pathway  integral component of membrane  ciliary membrane  cilium assembly  extracellular exosome  ciliary basal body docking  
NDEx NetworkTCTN3
Atlas of Cancer Signalling NetworkTCTN3
Wikipedia pathwaysTCTN3
Orthology - Evolution
OrthoDB26123
GeneTree (enSembl)ENSG00000119977
Phylogenetic Trees/Animal Genes : TreeFamTCTN3
HOVERGENQ6NUS6
HOGENOMQ6NUS6
Homologs : HomoloGeneTCTN3
Homology/Alignments : Family Browser (UCSC)TCTN3
Gene fusions - Rearrangements
Fusion : QuiverTCTN3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTCTN3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TCTN3
dbVarTCTN3
ClinVarTCTN3
1000_GenomesTCTN3 
Exome Variant ServerTCTN3
ExAC (Exome Aggregation Consortium)ENSG00000119977
GNOMAD BrowserENSG00000119977
Genetic variants : HAPMAP26123
Genomic Variants (DGV)TCTN3 [DGVbeta]
DECIPHERTCTN3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTCTN3 
Mutations
ICGC Data PortalTCTN3 
TCGA Data PortalTCTN3 
Broad Tumor PortalTCTN3
OASIS PortalTCTN3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTCTN3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTCTN3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TCTN3
DgiDB (Drug Gene Interaction Database)TCTN3
DoCM (Curated mutations)TCTN3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TCTN3 (select a term)
intoGenTCTN3
Cancer3DTCTN3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM258860    613847    614815   
Orphanet2510    2509   
DisGeNETTCTN3
MedgenTCTN3
Genetic Testing Registry TCTN3
NextProtQ6NUS6 [Medical]
TSGene26123
GENETestsTCTN3
Target ValidationTCTN3
Huge Navigator TCTN3 [HugePedia]
snp3D : Map Gene to Disease26123
BioCentury BCIQTCTN3
ClinGenTCTN3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD26123
Chemical/Pharm GKB GenePA162405513
Clinical trialTCTN3
Miscellaneous
canSAR (ICR)TCTN3 (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTCTN3
EVEXTCTN3
GoPubMedTCTN3
iHOPTCTN3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri Feb 23 18:55:12 CET 2018
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