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TDGF1P3 (teratocarcinoma-derived growth factor 1 pseudogene 3)

Identity

Alias (NCBI)CR-3
CRIPTO
CRIPTO-3
CRIPTO3
TDGF1
TDGF2
TDGF3
HGNC (Hugo) TDGF1P3
HGNC Alias symbTDGF2
CR-3
CRIPTO-3
CRIPTO3
HGNC Previous nameTDGF3
HGNC Previous nameteratocarcinoma-derived growth factor 3, pseudogene
LocusID (NCBI) 6998
Atlas_Id 52274
Location Xq23  [Link to chromosome band Xq23]
Location_base_pair Starts at 110520312 and ends at 110523021 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
TDGF1P3 (Xq23) / TDGF1 (3p21.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TDGF1P3   11703
Cards
Entrez_Gene (NCBI)TDGF1P3    teratocarcinoma-derived growth factor 1 pseudogene 3
AliasesCR-3; CRIPTO; CRIPTO-3; CRIPTO3; 
TDGF1; TDGF2; TDGF3
GeneCards (Weizmann)TDGF1P3
Ensembl hg19 (Hinxton)ENSG00000225366 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000225366 [Gene_View]  ENSG00000225366 [Sequence]  chrX:110520312-110523021 [Contig_View]  TDGF1P3 [Vega]
ICGC DataPortalENSG00000225366
TCGA cBioPortalTDGF1P3
AceView (NCBI)TDGF1P3
Genatlas (Paris)TDGF1P3
SOURCE (Princeton)TDGF1P3
Genetics Home Reference (NIH)TDGF1P3
Genomic and cartography
GoldenPath hg38 (UCSC)TDGF1P3  -     chrX:110520312-110523021 +  Xq23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TDGF1P3  -     Xq23   [Description]    (hg19-Feb_2009)
GoldenPathTDGF1P3 - Xq23 [CytoView hg19]  TDGF1P3 - Xq23 [CytoView hg38]
ImmunoBaseENSG00000225366
Genome Data Viewer NCBITDGF1P3 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)M96956
RefSeq transcript (Entrez)
Consensus coding sequences : CCDS (NCBI)TDGF1P3
Gene ExpressionTDGF1P3 [ NCBI-GEO ]   TDGF1P3 [ EBI - ARRAY_EXPRESS ]   TDGF1P3 [ SEEK ]   TDGF1P3 [ MEM ]
Gene Expression Viewer (FireBrowse)TDGF1P3 [ Firebrowse - Broad ]
GenevisibleExpression of TDGF1P3 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6998
GTEX Portal (Tissue expression)TDGF1P3
Human Protein AtlasENSG00000225366-TDGF1P3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP51864   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP51864  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP51864
PhosPhoSitePlusP51864
Domaine pattern : Prosite (Expaxy)EGF_1 (PS00022)   
Domains : Interpro (EBI)Cripto_growth_factor    Cryptic/Cripto_CFC-dom    EGF-like_dom   
Domain families : Pfam (Sanger)CFC (PF09443)   
Domain families : Pfam (NCBI)pfam09443   
Conserved Domain (NCBI)TDGF1P3
SuperfamilyP51864
AlphaFold pdb e-kbP51864   
Human Protein Atlas [tissue]ENSG00000225366-TDGF1P3 [tissue]
Protein Interaction databases
DIP (DOE-UCLA)P51864
IntAct (EBI)P51864
BioGRIDTDGF1P3
STRING (EMBL)TDGF1P3
ZODIACTDGF1P3
Ontologies - Pathways
QuickGOP51864
Ontology : AmiGOblood vessel development  signaling receptor binding  extracellular region  plasma membrane  signal transduction  determination of left/right symmetry  heart development  growth factor activity  anterior/posterior pattern specification  cell surface  nodal signaling pathway  nodal binding  anatomical structure development  activin receptor binding  
Ontology : EGO-EBIblood vessel development  signaling receptor binding  extracellular region  plasma membrane  signal transduction  determination of left/right symmetry  heart development  growth factor activity  anterior/posterior pattern specification  cell surface  nodal signaling pathway  nodal binding  anatomical structure development  activin receptor binding  
NDEx NetworkTDGF1P3
Atlas of Cancer Signalling NetworkTDGF1P3
Wikipedia pathwaysTDGF1P3
Orthology - Evolution
OrthoDB6998
GeneTree (enSembl)ENSG00000225366
Phylogenetic Trees/Animal Genes : TreeFamTDGF1P3
Homologs : HomoloGeneTDGF1P3
Homology/Alignments : Family Browser (UCSC)TDGF1P3
Gene fusions - Rearrangements
Fusion : QuiverTDGF1P3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTDGF1P3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TDGF1P3
dbVarTDGF1P3
ClinVarTDGF1P3
MonarchTDGF1P3
1000_GenomesTDGF1P3 
Exome Variant ServerTDGF1P3
GNOMAD BrowserENSG00000225366
Varsome BrowserTDGF1P3
ACMGTDGF1P3 variants
VarityP51864
Genomic Variants (DGV)TDGF1P3 [DGVbeta]
DECIPHERTDGF1P3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTDGF1P3 
Mutations
ICGC Data PortalTDGF1P3 
TCGA Data PortalTDGF1P3 
Broad Tumor PortalTDGF1P3
OASIS PortalTDGF1P3 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDTDGF1P3
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTDGF1P3
DgiDB (Drug Gene Interaction Database)TDGF1P3
DoCM (Curated mutations)TDGF1P3
CIViC (Clinical Interpretations of Variants in Cancer)TDGF1P3
Cancer3DTDGF1P3
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTDGF1P3
MedgenTDGF1P3
Genetic Testing Registry TDGF1P3
NextProtP51864 [Medical]
GENETestsTDGF1P3
Target ValidationTDGF1P3
Huge Navigator TDGF1P3 [HugePedia]
ClinGenTDGF1P3
Clinical trials, drugs, therapy
MyCancerGenomeTDGF1P3
Protein Interactions : CTDTDGF1P3
Pharm GKB GenePA36422
PharosP51864
Clinical trialTDGF1P3
Miscellaneous
canSAR (ICR)TDGF1P3
HarmonizomeTDGF1P3
DataMed IndexTDGF1P3
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTDGF1P3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 15:34:40 CEST 2021

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