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TDGF1P3 (teratocarcinoma-derived growth factor 1 pseudogene 3)

Identity

Alias_namesTDGF3
teratocarcinoma-derived growth factor 3
Alias_symbol (synonym)TDGF2
CR-3
CRIPTO-3
CRIPTO3
Other aliasCRIPTO
TDGF1
HGNC (Hugo) TDGF1P3
LocusID (NCBI) 6998
Atlas_Id 52274
Location Xq23  [Link to chromosome band Xq23]
Location_base_pair Starts at 110520312 and ends at 110523021 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
TDGF1P3 (Xq23) / TDGF1 (3p21.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TDGF1P3   11703
Cards
Entrez_Gene (NCBI)TDGF1P3  6998  teratocarcinoma-derived growth factor 1 pseudogene 3
AliasesCR-3; CRIPTO; CRIPTO-3; CRIPTO3; 
TDGF1; TDGF2; TDGF3
GeneCards (Weizmann)TDGF1P3
Ensembl hg19 (Hinxton)ENSG00000225366 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000225366 [Gene_View]  chrX:110520312-110523021 [Contig_View]  TDGF1P3 [Vega]
ICGC DataPortalENSG00000225366
TCGA cBioPortalTDGF1P3
AceView (NCBI)TDGF1P3
Genatlas (Paris)TDGF1P3
WikiGenes6998
SOURCE (Princeton)TDGF1P3
Genetics Home Reference (NIH)TDGF1P3
Genomic and cartography
GoldenPath hg38 (UCSC)TDGF1P3  -     chrX:110520312-110523021 +  Xq23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TDGF1P3  -     Xq23   [Description]    (hg19-Feb_2009)
EnsemblTDGF1P3 - Xq23 [CytoView hg19]  TDGF1P3 - Xq23 [CytoView hg38]
Mapping of homologs : NCBITDGF1P3 [Mapview hg19]  TDGF1P3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)M96956
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TDGF1P3
Cluster EST : UnigeneHs.592361 [ NCBI ]
CGAP (NCI)Hs.592361
Alternative Splicing GalleryENSG00000225366
Gene ExpressionTDGF1P3 [ NCBI-GEO ]   TDGF1P3 [ EBI - ARRAY_EXPRESS ]   TDGF1P3 [ SEEK ]   TDGF1P3 [ MEM ]
Gene Expression Viewer (FireBrowse)TDGF1P3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6998
GTEX Portal (Tissue expression)TDGF1P3
Protein : pattern, domain, 3D structure
UniProt/SwissProtP51864   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP51864  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP51864
Splice isoforms : SwissVarP51864
PhosPhoSitePlusP51864
Domaine pattern : Prosite (Expaxy)EGF_1 (PS00022)   
Domains : Interpro (EBI)Cripto_growth_factor    Cryptic/Cripto_CFC-dom    EGF-like_CS   
Domain families : Pfam (Sanger)CFC (PF09443)   
Domain families : Pfam (NCBI)pfam09443   
Conserved Domain (NCBI)TDGF1P3
DMDM Disease mutations6998
Blocks (Seattle)TDGF1P3
SuperfamilyP51864
Human Protein AtlasENSG00000225366
Peptide AtlasP51864
IPIIPI00020964   
Protein Interaction databases
DIP (DOE-UCLA)P51864
IntAct (EBI)P51864
FunCoupENSG00000225366
BioGRIDTDGF1P3
STRING (EMBL)TDGF1P3
ZODIACTDGF1P3
Ontologies - Pathways
QuickGOP51864
Ontology : AmiGOplasma membrane  signal transduction  growth factor activity  cell outer membrane  
Ontology : EGO-EBIplasma membrane  signal transduction  growth factor activity  cell outer membrane  
NDEx NetworkTDGF1P3
Atlas of Cancer Signalling NetworkTDGF1P3
Wikipedia pathwaysTDGF1P3
Orthology - Evolution
OrthoDB6998
GeneTree (enSembl)ENSG00000225366
Phylogenetic Trees/Animal Genes : TreeFamTDGF1P3
HOVERGENP51864
HOGENOMP51864
Homologs : HomoloGeneTDGF1P3
Homology/Alignments : Family Browser (UCSC)TDGF1P3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTDGF1P3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TDGF1P3
dbVarTDGF1P3
ClinVarTDGF1P3
1000_GenomesTDGF1P3 
Exome Variant ServerTDGF1P3
ExAC (Exome Aggregation Consortium)TDGF1P3 (select the gene name)
Genetic variants : HAPMAP6998
Genomic Variants (DGV)TDGF1P3 [DGVbeta]
DECIPHERTDGF1P3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTDGF1P3 
Mutations
ICGC Data PortalTDGF1P3 
TCGA Data PortalTDGF1P3 
Broad Tumor PortalTDGF1P3
OASIS PortalTDGF1P3 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDTDGF1P3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TDGF1P3
DgiDB (Drug Gene Interaction Database)TDGF1P3
DoCM (Curated mutations)TDGF1P3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TDGF1P3 (select a term)
intoGenTDGF1P3
Cancer3DTDGF1P3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTDGF1P3
Genetic Testing Registry TDGF1P3
NextProtP51864 [Medical]
TSGene6998
GENETestsTDGF1P3
Target ValidationTDGF1P3
Huge Navigator TDGF1P3 [HugePedia]
snp3D : Map Gene to Disease6998
BioCentury BCIQTDGF1P3
ClinGenTDGF1P3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6998
Chemical/Pharm GKB GenePA36422
Clinical trialTDGF1P3
Miscellaneous
canSAR (ICR)TDGF1P3 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTDGF1P3
EVEXTDGF1P3
GoPubMedTDGF1P3
iHOPTDGF1P3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 17:16:38 CEST 2017

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