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TDH (L-threonine dehydrogenase (pseudogene))

Identity

Alias (NCBI)SDR14E1P
HGNC (Hugo) TDH
HGNC Alias symbFLJ25033
SDR14E1P
HGNC Alias nameshort chain dehydrogenase/reductase family 14E, member 1 (pseudogene)
HGNC Previous nameL-threonine dehydrogenase
LocusID (NCBI) 157739
Atlas_Id 74598
Location 8p23.1  [Link to chromosome band 8p23]
Location_base_pair Starts at 11339637 and ends at 11368452 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TDH   15547
Cards
Entrez_Gene (NCBI)TDH    L-threonine dehydrogenase (pseudogene)
AliasesSDR14E1P
GeneCards (Weizmann)TDH
Ensembl hg19 (Hinxton)ENSG00000154316 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000154316 [Gene_View]  ENSG00000154316 [Sequence]  chr8:11339637-11368452 [Contig_View]  TDH [Vega]
ICGC DataPortalENSG00000154316
TCGA cBioPortalTDH
AceView (NCBI)TDH
Genatlas (Paris)TDH
SOURCE (Princeton)TDH
Genetics Home Reference (NIH)TDH
Genomic and cartography
GoldenPath hg38 (UCSC)TDH  -     chr8:11339637-11368452 +  8p23.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TDH  -     8p23.1   [Description]    (hg19-Feb_2009)
GoldenPathTDH - 8p23.1 [CytoView hg19]  TDH - 8p23.1 [CytoView hg38]
ImmunoBaseENSG00000154316
Genome Data Viewer NCBITDH [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AJ301562 AK057762 AY101186 AY101187 BC074983
RefSeq transcript (Entrez)
Consensus coding sequences : CCDS (NCBI)TDH
Gene ExpressionTDH [ NCBI-GEO ]   TDH [ EBI - ARRAY_EXPRESS ]   TDH [ SEEK ]   TDH [ MEM ]
Gene Expression Viewer (FireBrowse)TDH [ Firebrowse - Broad ]
GenevisibleExpression of TDH in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)157739
GTEX Portal (Tissue expression)TDH
Human Protein AtlasENSG00000154316-TDH [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IZJ6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IZJ6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IZJ6
PhosPhoSitePlusQ8IZJ6
Domains : Interpro (EBI)Epimerase_deHydtase    NAD(P)-bd_dom_sf   
Domain families : Pfam (Sanger)Epimerase (PF01370)   
Domain families : Pfam (NCBI)pfam01370   
Conserved Domain (NCBI)TDH
SuperfamilyQ8IZJ6
AlphaFold pdb e-kbQ8IZJ6   
Human Protein Atlas [tissue]ENSG00000154316-TDH [tissue]
HPRD10264
Protein Interaction databases
DIP (DOE-UCLA)Q8IZJ6
IntAct (EBI)Q8IZJ6
BioGRIDTDH
STRING (EMBL)TDH
ZODIACTDH
Ontologies - Pathways
QuickGOQ8IZJ6
Ontology : AmiGOmitochondrial inner membrane  threonine catabolic process  L-threonine 3-dehydrogenase activity  L-threonine catabolic process to glycine  
Ontology : EGO-EBImitochondrial inner membrane  threonine catabolic process  L-threonine 3-dehydrogenase activity  L-threonine catabolic process to glycine  
NDEx NetworkTDH
Atlas of Cancer Signalling NetworkTDH
Wikipedia pathwaysTDH
Orthology - Evolution
OrthoDB157739
GeneTree (enSembl)ENSG00000154316
Phylogenetic Trees/Animal Genes : TreeFamTDH
Homologs : HomoloGeneTDH
Homology/Alignments : Family Browser (UCSC)TDH
Gene fusions - Rearrangements
Fusion : QuiverTDH
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTDH [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TDH
dbVarTDH
ClinVarTDH
MonarchTDH
1000_GenomesTDH 
Exome Variant ServerTDH
GNOMAD BrowserENSG00000154316
Varsome BrowserTDH
ACMGTDH variants
VarityQ8IZJ6
Genomic Variants (DGV)TDH [DGVbeta]
DECIPHERTDH [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTDH 
Mutations
ICGC Data PortalTDH 
TCGA Data PortalTDH 
Broad Tumor PortalTDH
OASIS PortalTDH [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDTDH
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTDH
DgiDB (Drug Gene Interaction Database)TDH
DoCM (Curated mutations)TDH
CIViC (Clinical Interpretations of Variants in Cancer)TDH
Cancer3DTDH
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTDH
MedgenTDH
Genetic Testing Registry TDH
NextProtQ8IZJ6 [Medical]
GENETestsTDH
Target ValidationTDH
Huge Navigator TDH [HugePedia]
ClinGenTDH
Clinical trials, drugs, therapy
MyCancerGenomeTDH
Protein Interactions : CTDTDH
Pharm GKB GenePA37977
PharosQ8IZJ6
Clinical trialTDH
Miscellaneous
canSAR (ICR)TDH
HarmonizomeTDH
DataMed IndexTDH
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTDH
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 16:25:06 CEST 2021

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