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TDH (L-threonine dehydrogenase (pseudogene))

Identity

Alias_namesL-threonine dehydrogenase
Alias_symbol (synonym)FLJ25033
SDR14E1P
Other alias
HGNC (Hugo) TDH
LocusID (NCBI) 157739
Atlas_Id 74598
Location 8p23.1  [Link to chromosome band 8p23]
Location_base_pair Starts at 11339637 and ends at 11368452 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TDH   15547
Cards
Entrez_Gene (NCBI)TDH  157739  L-threonine dehydrogenase (pseudogene)
AliasesSDR14E1P
GeneCards (Weizmann)TDH
Ensembl hg19 (Hinxton)ENSG00000154316 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000154316 [Gene_View]  chr8:11339637-11368452 [Contig_View]  TDH [Vega]
ICGC DataPortalENSG00000154316
TCGA cBioPortalTDH
AceView (NCBI)TDH
Genatlas (Paris)TDH
WikiGenes157739
SOURCE (Princeton)TDH
Genetics Home Reference (NIH)TDH
Genomic and cartography
GoldenPath hg38 (UCSC)TDH  -     chr8:11339637-11368452 +  8p23.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TDH  -     8p23.1   [Description]    (hg19-Feb_2009)
EnsemblTDH - 8p23.1 [CytoView hg19]  TDH - 8p23.1 [CytoView hg38]
Mapping of homologs : NCBITDH [Mapview hg19]  TDH [Mapview hg38]
OMIM615174   
Gene and transcription
Genbank (Entrez)AJ301562 AK057762 AY101186 AY101187 BC074983
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TDH
Cluster EST : UnigeneHs.583896 [ NCBI ]
CGAP (NCI)Hs.583896
Alternative Splicing GalleryENSG00000154316
Gene ExpressionTDH [ NCBI-GEO ]   TDH [ EBI - ARRAY_EXPRESS ]   TDH [ SEEK ]   TDH [ MEM ]
Gene Expression Viewer (FireBrowse)TDH [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)157739
GTEX Portal (Tissue expression)TDH
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IZJ6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IZJ6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IZJ6
Splice isoforms : SwissVarQ8IZJ6
PhosPhoSitePlusQ8IZJ6
Domains : Interpro (EBI)Epimerase_deHydtase    NAD(P)-bd_dom   
Domain families : Pfam (Sanger)Epimerase (PF01370)   
Domain families : Pfam (NCBI)pfam01370   
Conserved Domain (NCBI)TDH
DMDM Disease mutations157739
Blocks (Seattle)TDH
SuperfamilyQ8IZJ6
Human Protein AtlasENSG00000154316
Peptide AtlasQ8IZJ6
HPRD10264
IPIIPI00065320   IPI00789813   IPI00064794   
Protein Interaction databases
DIP (DOE-UCLA)Q8IZJ6
IntAct (EBI)Q8IZJ6
FunCoupENSG00000154316
BioGRIDTDH
STRING (EMBL)TDH
ZODIACTDH
Ontologies - Pathways
QuickGOQ8IZJ6
Ontology : AmiGOcatalytic activity  mitochondrial inner membrane  L-threonine catabolic process to glycine  coenzyme binding  
Ontology : EGO-EBIcatalytic activity  mitochondrial inner membrane  L-threonine catabolic process to glycine  coenzyme binding  
NDEx NetworkTDH
Atlas of Cancer Signalling NetworkTDH
Wikipedia pathwaysTDH
Orthology - Evolution
OrthoDB157739
GeneTree (enSembl)ENSG00000154316
Phylogenetic Trees/Animal Genes : TreeFamTDH
HOVERGENQ8IZJ6
HOGENOMQ8IZJ6
Homologs : HomoloGeneTDH
Homology/Alignments : Family Browser (UCSC)TDH
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTDH [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TDH
dbVarTDH
ClinVarTDH
1000_GenomesTDH 
Exome Variant ServerTDH
ExAC (Exome Aggregation Consortium)TDH (select the gene name)
Genetic variants : HAPMAP157739
Genomic Variants (DGV)TDH [DGVbeta]
DECIPHERTDH [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTDH 
Mutations
ICGC Data PortalTDH 
TCGA Data PortalTDH 
Broad Tumor PortalTDH
OASIS PortalTDH [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTDH  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTDH
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TDH
DgiDB (Drug Gene Interaction Database)TDH
DoCM (Curated mutations)TDH (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TDH (select a term)
intoGenTDH
Cancer3DTDH(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615174   
Orphanet
MedgenTDH
Genetic Testing Registry TDH
NextProtQ8IZJ6 [Medical]
TSGene157739
GENETestsTDH
Target ValidationTDH
Huge Navigator TDH [HugePedia]
snp3D : Map Gene to Disease157739
BioCentury BCIQTDH
ClinGenTDH
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD157739
Chemical/Pharm GKB GenePA37977
Clinical trialTDH
Miscellaneous
canSAR (ICR)TDH (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTDH
EVEXTDH
GoPubMedTDH
iHOPTDH
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Wed May 31 15:45:10 CEST 2017

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