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TDRD1 (tudor domain containing 1)

Identity

Alias_symbol (synonym)CT41.1
Other alias
HGNC (Hugo) TDRD1
LocusID (NCBI) 56165
Atlas_Id 53493
Location 10q25.3  [Link to chromosome band 10q25]
Location_base_pair Starts at 114179270 and ends at 114232304 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TDRD1   11712
Cards
Entrez_Gene (NCBI)TDRD1  56165  tudor domain containing 1
AliasesCT41.1
GeneCards (Weizmann)TDRD1
Ensembl hg19 (Hinxton)ENSG00000095627 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000095627 [Gene_View]  chr10:114179270-114232304 [Contig_View]  TDRD1 [Vega]
ICGC DataPortalENSG00000095627
TCGA cBioPortalTDRD1
AceView (NCBI)TDRD1
Genatlas (Paris)TDRD1
WikiGenes56165
SOURCE (Princeton)TDRD1
Genetics Home Reference (NIH)TDRD1
Genomic and cartography
GoldenPath hg38 (UCSC)TDRD1  -     chr10:114179270-114232304 +  10q25.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TDRD1  -     10q25.3   [Description]    (hg19-Feb_2009)
EnsemblTDRD1 - 10q25.3 [CytoView hg19]  TDRD1 - 10q25.3 [CytoView hg38]
Mapping of homologs : NCBITDRD1 [Mapview hg19]  TDRD1 [Mapview hg38]
OMIM605796   
Gene and transcription
Genbank (Entrez)AF285606 AK024735 AK122916 AK304331 AL833340
RefSeq transcript (Entrez)NM_198795
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TDRD1
Cluster EST : UnigeneHs.333132 [ NCBI ]
CGAP (NCI)Hs.333132
Alternative Splicing GalleryENSG00000095627
Gene ExpressionTDRD1 [ NCBI-GEO ]   TDRD1 [ EBI - ARRAY_EXPRESS ]   TDRD1 [ SEEK ]   TDRD1 [ MEM ]
Gene Expression Viewer (FireBrowse)TDRD1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)56165
GTEX Portal (Tissue expression)TDRD1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BXT4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BXT4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BXT4
Splice isoforms : SwissVarQ9BXT4
PhosPhoSitePlusQ9BXT4
Domaine pattern : Prosite (Expaxy)TUDOR (PS50304)    ZF_MYND_1 (PS01360)    ZF_MYND_2 (PS50865)   
Domains : Interpro (EBI)Tudor    Znf_MYND   
Domain families : Pfam (Sanger)TUDOR (PF00567)    zf-MYND (PF01753)   
Domain families : Pfam (NCBI)pfam00567    pfam01753   
Domain families : Smart (EMBL)TUDOR (SM00333)  
Conserved Domain (NCBI)TDRD1
DMDM Disease mutations56165
Blocks (Seattle)TDRD1
PDB (SRS)5M9N   
PDB (PDBSum)5M9N   
PDB (IMB)5M9N   
PDB (RSDB)5M9N   
Structural Biology KnowledgeBase5M9N   
SCOP (Structural Classification of Proteins)5M9N   
CATH (Classification of proteins structures)5M9N   
SuperfamilyQ9BXT4
Human Protein AtlasENSG00000095627
Peptide AtlasQ9BXT4
HPRD12047
IPIIPI00394796   IPI00647142   IPI00440758   IPI00908751   
Protein Interaction databases
DIP (DOE-UCLA)Q9BXT4
IntAct (EBI)Q9BXT4
FunCoupENSG00000095627
BioGRIDTDRD1
STRING (EMBL)TDRD1
ZODIACTDRD1
Ontologies - Pathways
QuickGOQ9BXT4
Ontology : AmiGOcytoplasm  multicellular organism development  germ cell development  spermatogenesis  gene silencing by RNA  chromatoid body  piRNA metabolic process  DNA methylation involved in gamete generation  P granule  metal ion binding  meiotic cell cycle  pi-body  
Ontology : EGO-EBIcytoplasm  multicellular organism development  germ cell development  spermatogenesis  gene silencing by RNA  chromatoid body  piRNA metabolic process  DNA methylation involved in gamete generation  P granule  metal ion binding  meiotic cell cycle  pi-body  
NDEx NetworkTDRD1
Atlas of Cancer Signalling NetworkTDRD1
Wikipedia pathwaysTDRD1
Orthology - Evolution
OrthoDB56165
GeneTree (enSembl)ENSG00000095627
Phylogenetic Trees/Animal Genes : TreeFamTDRD1
HOVERGENQ9BXT4
HOGENOMQ9BXT4
Homologs : HomoloGeneTDRD1
Homology/Alignments : Family Browser (UCSC)TDRD1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTDRD1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TDRD1
dbVarTDRD1
ClinVarTDRD1
1000_GenomesTDRD1 
Exome Variant ServerTDRD1
ExAC (Exome Aggregation Consortium)TDRD1 (select the gene name)
Genetic variants : HAPMAP56165
Genomic Variants (DGV)TDRD1 [DGVbeta]
DECIPHERTDRD1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTDRD1 
Mutations
ICGC Data PortalTDRD1 
TCGA Data PortalTDRD1 
Broad Tumor PortalTDRD1
OASIS PortalTDRD1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTDRD1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTDRD1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TDRD1
DgiDB (Drug Gene Interaction Database)TDRD1
DoCM (Curated mutations)TDRD1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TDRD1 (select a term)
intoGenTDRD1
Cancer3DTDRD1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605796   
Orphanet
MedgenTDRD1
Genetic Testing Registry TDRD1
NextProtQ9BXT4 [Medical]
TSGene56165
GENETestsTDRD1
Target ValidationTDRD1
Huge Navigator TDRD1 [HugePedia]
snp3D : Map Gene to Disease56165
BioCentury BCIQTDRD1
ClinGenTDRD1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD56165
Chemical/Pharm GKB GenePA36430
Clinical trialTDRD1
Miscellaneous
canSAR (ICR)TDRD1 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTDRD1
EVEXTDRD1
GoPubMedTDRD1
iHOPTDRD1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 14:09:29 CEST 2017

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