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TDRD1 (tudor domain containing 1)

Identity

Alias (NCBI)CT41.1
HGNC (Hugo) TDRD1
HGNC Alias symbCT41.1
HGNC Alias namecancer/testis antigen 41.1
LocusID (NCBI) 56165
Atlas_Id 53493
Location 10q25.3  [Link to chromosome band 10q25]
Location_base_pair Starts at 114179270 and ends at 114232304 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TDRD1   11712
Cards
Entrez_Gene (NCBI)TDRD1    tudor domain containing 1
AliasesCT41.1
GeneCards (Weizmann)TDRD1
Ensembl hg19 (Hinxton)ENSG00000095627 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000095627 [Gene_View]  ENSG00000095627 [Sequence]  chr10:114179270-114232304 [Contig_View]  TDRD1 [Vega]
ICGC DataPortalENSG00000095627
TCGA cBioPortalTDRD1
AceView (NCBI)TDRD1
Genatlas (Paris)TDRD1
SOURCE (Princeton)TDRD1
Genetics Home Reference (NIH)TDRD1
Genomic and cartography
GoldenPath hg38 (UCSC)TDRD1  -     chr10:114179270-114232304 +  10q25.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TDRD1  -     10q25.3   [Description]    (hg19-Feb_2009)
GoldenPathTDRD1 - 10q25.3 [CytoView hg19]  TDRD1 - 10q25.3 [CytoView hg38]
ImmunoBaseENSG00000095627
Genome Data Viewer NCBITDRD1 [Mapview hg19]  
OMIM605796   
Gene and transcription
Genbank (Entrez)AF285606 AK024735 AK122916 AK304331 AL833340
RefSeq transcript (Entrez)NM_001365891 NM_001385363 NM_001385364 NM_001385365 NM_001385366 NM_001385367 NM_001385368 NM_001385369 NM_001385370 NM_001385371 NM_001385372 NM_198795
Consensus coding sequences : CCDS (NCBI)TDRD1
Gene ExpressionTDRD1 [ NCBI-GEO ]   TDRD1 [ EBI - ARRAY_EXPRESS ]   TDRD1 [ SEEK ]   TDRD1 [ MEM ]
Gene Expression Viewer (FireBrowse)TDRD1 [ Firebrowse - Broad ]
GenevisibleExpression of TDRD1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)56165
GTEX Portal (Tissue expression)TDRD1
Human Protein AtlasENSG00000095627-TDRD1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BXT4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BXT4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BXT4
PhosPhoSitePlusQ9BXT4
Domaine pattern : Prosite (Expaxy)TUDOR (PS50304)    ZF_MYND_1 (PS01360)    ZF_MYND_2 (PS50865)   
Domains : Interpro (EBI)SNase_OB-fold_sf    Tudor    Znf_MYND   
Domain families : Pfam (Sanger)TUDOR (PF00567)    zf-MYND (PF01753)   
Domain families : Pfam (NCBI)pfam00567    pfam01753   
Domain families : Smart (EMBL)TUDOR (SM00333)  
Conserved Domain (NCBI)TDRD1
PDB (RSDB)5M9N   
PDB Europe5M9N   
PDB (PDBSum)5M9N   
PDB (IMB)5M9N   
Structural Biology KnowledgeBase5M9N   
SCOP (Structural Classification of Proteins)5M9N   
CATH (Classification of proteins structures)5M9N   
SuperfamilyQ9BXT4
AlphaFold pdb e-kbQ9BXT4   
Human Protein Atlas [tissue]ENSG00000095627-TDRD1 [tissue]
HPRD12047
Protein Interaction databases
DIP (DOE-UCLA)Q9BXT4
IntAct (EBI)Q9BXT4
BioGRIDTDRD1
STRING (EMBL)TDRD1
ZODIACTDRD1
Ontologies - Pathways
QuickGOQ9BXT4
Ontology : AmiGOcytoplasm  multicellular organism development  germ cell development  spermatogenesis  gene silencing by RNA  chromatoid body  piRNA metabolic process  DNA methylation involved in gamete generation  P granule  metal ion binding  meiotic cell cycle  pi-body  ribonucleoprotein complex  
Ontology : EGO-EBIcytoplasm  multicellular organism development  germ cell development  spermatogenesis  gene silencing by RNA  chromatoid body  piRNA metabolic process  DNA methylation involved in gamete generation  P granule  metal ion binding  meiotic cell cycle  pi-body  ribonucleoprotein complex  
NDEx NetworkTDRD1
Atlas of Cancer Signalling NetworkTDRD1
Wikipedia pathwaysTDRD1
Orthology - Evolution
OrthoDB56165
GeneTree (enSembl)ENSG00000095627
Phylogenetic Trees/Animal Genes : TreeFamTDRD1
Homologs : HomoloGeneTDRD1
Homology/Alignments : Family Browser (UCSC)TDRD1
Gene fusions - Rearrangements
Fusion : QuiverTDRD1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTDRD1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TDRD1
dbVarTDRD1
ClinVarTDRD1
MonarchTDRD1
1000_GenomesTDRD1 
Exome Variant ServerTDRD1
GNOMAD BrowserENSG00000095627
Varsome BrowserTDRD1
ACMGTDRD1 variants
VarityQ9BXT4
Genomic Variants (DGV)TDRD1 [DGVbeta]
DECIPHERTDRD1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTDRD1 
Mutations
ICGC Data PortalTDRD1 
TCGA Data PortalTDRD1 
Broad Tumor PortalTDRD1
OASIS PortalTDRD1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTDRD1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTDRD1
Mutations and Diseases : HGMDTDRD1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTDRD1
DgiDB (Drug Gene Interaction Database)TDRD1
DoCM (Curated mutations)TDRD1
CIViC (Clinical Interpretations of Variants in Cancer)TDRD1
Cancer3DTDRD1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605796   
Orphanet
DisGeNETTDRD1
MedgenTDRD1
Genetic Testing Registry TDRD1
NextProtQ9BXT4 [Medical]
GENETestsTDRD1
Target ValidationTDRD1
Huge Navigator TDRD1 [HugePedia]
ClinGenTDRD1
Clinical trials, drugs, therapy
MyCancerGenomeTDRD1
Protein Interactions : CTDTDRD1
Pharm GKB GenePA36430
PharosQ9BXT4
Clinical trialTDRD1
Miscellaneous
canSAR (ICR)TDRD1
HarmonizomeTDRD1
DataMed IndexTDRD1
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTDRD1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:34:41 CEST 2021

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