Atlas of Genetics and Cytogenetics in Oncology and Haematology

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TDRD10 (tudor domain containing 10)

Identity

Alias_symbol (synonym)DKFZp434M202
Other alias-
HGNC (Hugo) TDRD10
LocusID (NCBI) 126668
Atlas_Id 53649
Location 1q21.3  [Link to chromosome band 1q21]
Location_base_pair Starts at 154502219 and ends at 154548147 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
C20orf194 (20p13) / TDRD10 (1q21.3)CTSS (1q21.3) / TDRD10 (1q21.3)C20orf194 20p13 / TDRD10 1q21.3
CTSS 1q21.3 / TDRD10 1q21.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 2 ]
  CTSS/TDRD10 (1q21)
t(1;20)(q21;p13) C20orf194/TDRD10

External links

Nomenclature
HGNC (Hugo)TDRD10   25316
Cards
Entrez_Gene (NCBI)TDRD10  126668  tudor domain containing 10
Aliases
GeneCards (Weizmann)TDRD10
Ensembl hg19 (Hinxton)ENSG00000163239 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000163239 [Gene_View]  ENSG00000163239 [Sequence]  chr1:154502219-154548147 [Contig_View]  TDRD10 [Vega]
ICGC DataPortalENSG00000163239
TCGA cBioPortalTDRD10
AceView (NCBI)TDRD10
Genatlas (Paris)TDRD10
WikiGenes126668
SOURCE (Princeton)TDRD10
Genetics Home Reference (NIH)TDRD10
Genomic and cartography
GoldenPath hg38 (UCSC)TDRD10  -     chr1:154502219-154548147 +  1q21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TDRD10  -     1q21.3   [Description]    (hg19-Feb_2009)
GoldenPathTDRD10 - 1q21.3 [CytoView hg19]  TDRD10 - 1q21.3 [CytoView hg38]
ImmunoBaseENSG00000163239
Mapping of homologs : NCBITDRD10 [Mapview hg19]  TDRD10 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK302144 AL713777 AY358195 BC044864 BC100895
RefSeq transcript (Entrez)NM_001098475 NM_182499
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TDRD10
Cluster EST : UnigeneHs.387671 [ NCBI ]
CGAP (NCI)Hs.387671
Alternative Splicing GalleryENSG00000163239
Gene ExpressionTDRD10 [ NCBI-GEO ]   TDRD10 [ EBI - ARRAY_EXPRESS ]   TDRD10 [ SEEK ]   TDRD10 [ MEM ]
Gene Expression Viewer (FireBrowse)TDRD10 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)126668
GTEX Portal (Tissue expression)TDRD10
Human Protein AtlasENSG00000163239-TDRD10 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5VZ19   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5VZ19  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5VZ19
Splice isoforms : SwissVarQ5VZ19
PhosPhoSitePlusQ5VZ19
Domaine pattern : Prosite (Expaxy)RRM (PS50102)   
Domains : Interpro (EBI)Nucleotide-bd_a/b_plait_sf    RBD_domain_sf    RRM_dom    Tudor   
Domain families : Pfam (Sanger)RRM_1 (PF00076)    TUDOR (PF00567)   
Domain families : Pfam (NCBI)pfam00076    pfam00567   
Domain families : Smart (EMBL)RRM (SM00360)  
Conserved Domain (NCBI)TDRD10
DMDM Disease mutations126668
Blocks (Seattle)TDRD10
SuperfamilyQ5VZ19
Human Protein Atlas [tissue]ENSG00000163239-TDRD10 [tissue]
Peptide AtlasQ5VZ19
HPRD13196
IPIIPI00432733   IPI00514618   
Protein Interaction databases
DIP (DOE-UCLA)Q5VZ19
IntAct (EBI)Q5VZ19
FunCoupENSG00000163239
BioGRIDTDRD10
STRING (EMBL)TDRD10
ZODIACTDRD10
Ontologies - Pathways
QuickGOQ5VZ19
Ontology : AmiGORNA binding  
Ontology : EGO-EBIRNA binding  
NDEx NetworkTDRD10
Atlas of Cancer Signalling NetworkTDRD10
Wikipedia pathwaysTDRD10
Orthology - Evolution
OrthoDB126668
GeneTree (enSembl)ENSG00000163239
Phylogenetic Trees/Animal Genes : TreeFamTDRD10
HOGENOMQ5VZ19
Homologs : HomoloGeneTDRD10
Homology/Alignments : Family Browser (UCSC)TDRD10
Gene fusions - Rearrangements
Fusion : MitelmanC20orf194/TDRD10 [20p13/1q21.3]  [t(1;20)(q21;p13)]  
Fusion : MitelmanCTSS/TDRD10 [1q21.3/1q21.3]  [t(1;1)(q21;q21)]  
Fusion PortalC20orf194 20p13 TDRD10 1q21.3 BRCA
Fusion PortalCTSS 1q21.3 TDRD10 1q21.3 SKCM
Fusion : QuiverTDRD10
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTDRD10 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TDRD10
dbVarTDRD10
ClinVarTDRD10
1000_GenomesTDRD10 
Exome Variant ServerTDRD10
ExAC (Exome Aggregation Consortium)ENSG00000163239
GNOMAD BrowserENSG00000163239
Varsome BrowserTDRD10
Genetic variants : HAPMAP126668
Genomic Variants (DGV)TDRD10 [DGVbeta]
DECIPHERTDRD10 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTDRD10 
Mutations
ICGC Data PortalTDRD10 
TCGA Data PortalTDRD10 
Broad Tumor PortalTDRD10
OASIS PortalTDRD10 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTDRD10  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTDRD10
Mutations and Diseases : HGMDTDRD10
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TDRD10
DgiDB (Drug Gene Interaction Database)TDRD10
DoCM (Curated mutations)TDRD10 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TDRD10 (select a term)
intoGenTDRD10
Cancer3DTDRD10(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTDRD10
MedgenTDRD10
Genetic Testing Registry TDRD10
NextProtQ5VZ19 [Medical]
TSGene126668
GENETestsTDRD10
Target ValidationTDRD10
Huge Navigator TDRD10 [HugePedia]
snp3D : Map Gene to Disease126668
BioCentury BCIQTDRD10
ClinGenTDRD10
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD126668
Chemical/Pharm GKB GenePA142670823
Clinical trialTDRD10
Miscellaneous
canSAR (ICR)TDRD10 (select the gene name)
DataMed IndexTDRD10
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTDRD10
EVEXTDRD10
GoPubMedTDRD10
iHOPTDRD10
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Nov 13 18:11:18 CET 2019
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