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TDRD12 (tudor domain containing 12)

Identity

Alias_symbol (synonym)ECAT8
FLJ13072
Other alias
HGNC (Hugo) TDRD12
LocusID (NCBI) 91646
Atlas_Id 74600
Location 19q13.11  [Link to chromosome band 19q13]
Location_base_pair Starts at 32719773 and ends at 32790808 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CEBPG (19q13.11) / TDRD12 (19q13.11)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TDRD12   25044
Cards
Entrez_Gene (NCBI)TDRD12  91646  tudor domain containing 12
AliasesECAT8
GeneCards (Weizmann)TDRD12
Ensembl hg19 (Hinxton)ENSG00000173809 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000173809 [Gene_View]  chr19:32719773-32790808 [Contig_View]  TDRD12 [Vega]
ICGC DataPortalENSG00000173809
TCGA cBioPortalTDRD12
AceView (NCBI)TDRD12
Genatlas (Paris)TDRD12
WikiGenes91646
SOURCE (Princeton)TDRD12
Genetics Home Reference (NIH)TDRD12
Genomic and cartography
GoldenPath hg38 (UCSC)TDRD12  -     chr19:32719773-32790808 +  19q13.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TDRD12  -     19q13.11   [Description]    (hg19-Feb_2009)
EnsemblTDRD12 - 19q13.11 [CytoView hg19]  TDRD12 - 19q13.11 [CytoView hg38]
Mapping of homologs : NCBITDRD12 [Mapview hg19]  TDRD12 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB211063 AK023134 BC049000 BC148519 BI769394
RefSeq transcript (Entrez)NM_001015890 NM_001110822
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TDRD12
Cluster EST : UnigeneHs.729739 [ NCBI ]
CGAP (NCI)Hs.729739
Alternative Splicing GalleryENSG00000173809
Gene ExpressionTDRD12 [ NCBI-GEO ]   TDRD12 [ EBI - ARRAY_EXPRESS ]   TDRD12 [ SEEK ]   TDRD12 [ MEM ]
Gene Expression Viewer (FireBrowse)TDRD12 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)91646
GTEX Portal (Tissue expression)TDRD12
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ587J7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ587J7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ587J7
Splice isoforms : SwissVarQ587J7
Catalytic activity : Enzyme3.6.4.13 [ Enzyme-Expasy ]   3.6.4.133.6.4.13 [ IntEnz-EBI ]   3.6.4.13 [ BRENDA ]   3.6.4.13 [ KEGG ]   
PhosPhoSitePlusQ587J7
Domains : Interpro (EBI)DEAD/DEAH_box_helicase_dom    P-loop_NTPase    Tudor   
Domain families : Pfam (Sanger)DEAD (PF00270)    TUDOR (PF00567)   
Domain families : Pfam (NCBI)pfam00270    pfam00567   
Conserved Domain (NCBI)TDRD12
DMDM Disease mutations91646
Blocks (Seattle)TDRD12
SuperfamilyQ587J7
Human Protein AtlasENSG00000173809
Peptide AtlasQ587J7
IPIIPI00797525   IPI00760639   
Protein Interaction databases
DIP (DOE-UCLA)Q587J7
IntAct (EBI)Q587J7
FunCoupENSG00000173809
BioGRIDTDRD12
STRING (EMBL)TDRD12
ZODIACTDRD12
Ontologies - Pathways
QuickGOQ587J7
Ontology : AmiGOmolecular_function  nucleic acid binding  helicase activity  ATP binding  cellular_component  male meiotic nuclear division  multicellular organism development  spermatogenesis  biological_process  fertilization  cell differentiation  gene silencing by RNA  piRNA metabolic process  DNA methylation involved in gamete generation  positive regulation of protein targeting to mitochondrion  PET complex  
Ontology : EGO-EBImolecular_function  nucleic acid binding  helicase activity  ATP binding  cellular_component  male meiotic nuclear division  multicellular organism development  spermatogenesis  biological_process  fertilization  cell differentiation  gene silencing by RNA  piRNA metabolic process  DNA methylation involved in gamete generation  positive regulation of protein targeting to mitochondrion  PET complex  
NDEx NetworkTDRD12
Atlas of Cancer Signalling NetworkTDRD12
Wikipedia pathwaysTDRD12
Orthology - Evolution
OrthoDB91646
GeneTree (enSembl)ENSG00000173809
Phylogenetic Trees/Animal Genes : TreeFamTDRD12
HOVERGENQ587J7
HOGENOMQ587J7
Homologs : HomoloGeneTDRD12
Homology/Alignments : Family Browser (UCSC)TDRD12
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTDRD12 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TDRD12
dbVarTDRD12
ClinVarTDRD12
1000_GenomesTDRD12 
Exome Variant ServerTDRD12
ExAC (Exome Aggregation Consortium)TDRD12 (select the gene name)
Genetic variants : HAPMAP91646
Genomic Variants (DGV)TDRD12 [DGVbeta]
DECIPHERTDRD12 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTDRD12 
Mutations
ICGC Data PortalTDRD12 
TCGA Data PortalTDRD12 
Broad Tumor PortalTDRD12
OASIS PortalTDRD12 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTDRD12  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTDRD12
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TDRD12
DgiDB (Drug Gene Interaction Database)TDRD12
DoCM (Curated mutations)TDRD12 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TDRD12 (select a term)
intoGenTDRD12
Cancer3DTDRD12(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTDRD12
Genetic Testing Registry TDRD12
NextProtQ587J7 [Medical]
TSGene91646
GENETestsTDRD12
Target ValidationTDRD12
Huge Navigator TDRD12 [HugePedia]
snp3D : Map Gene to Disease91646
BioCentury BCIQTDRD12
ClinGenTDRD12
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD91646
Chemical/Pharm GKB GenePA162405542
Clinical trialTDRD12
Miscellaneous
canSAR (ICR)TDRD12 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTDRD12
EVEXTDRD12
GoPubMedTDRD12
iHOPTDRD12
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:41:11 CEST 2017

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