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TDRD12 (tudor domain containing 12)

Identity

Alias (NCBI)ECAT8
HGNC (Hugo) TDRD12
HGNC Alias symbECAT8
FLJ13072
LocusID (NCBI) 91646
Atlas_Id 74600
Location 19q13.11  [Link to chromosome band 19q13]
Location_base_pair Starts at 32719767 and ends at 32829579 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CEBPG (19q13.11) / TDRD12 (19q13.11)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TDRD12   25044
Cards
Entrez_Gene (NCBI)TDRD12    tudor domain containing 12
AliasesECAT8
GeneCards (Weizmann)TDRD12
Ensembl hg19 (Hinxton)ENSG00000173809 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000173809 [Gene_View]  ENSG00000173809 [Sequence]  chr19:32719767-32829579 [Contig_View]  TDRD12 [Vega]
ICGC DataPortalENSG00000173809
TCGA cBioPortalTDRD12
AceView (NCBI)TDRD12
Genatlas (Paris)TDRD12
SOURCE (Princeton)TDRD12
Genetics Home Reference (NIH)TDRD12
Genomic and cartography
GoldenPath hg38 (UCSC)TDRD12  -     chr19:32719767-32829579 +  19q13.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TDRD12  -     19q13.11   [Description]    (hg19-Feb_2009)
GoldenPathTDRD12 - 19q13.11 [CytoView hg19]  TDRD12 - 19q13.11 [CytoView hg38]
ImmunoBaseENSG00000173809
Genome Data Viewer NCBITDRD12 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AB211063 AK023134 BC049000 BI769394
RefSeq transcript (Entrez)NM_001015890 NM_001110822 NM_001366102
Consensus coding sequences : CCDS (NCBI)TDRD12
Gene ExpressionTDRD12 [ NCBI-GEO ]   TDRD12 [ EBI - ARRAY_EXPRESS ]   TDRD12 [ SEEK ]   TDRD12 [ MEM ]
Gene Expression Viewer (FireBrowse)TDRD12 [ Firebrowse - Broad ]
GenevisibleExpression of TDRD12 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)91646
GTEX Portal (Tissue expression)TDRD12
Human Protein AtlasENSG00000173809-TDRD12 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ587J7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ587J7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ587J7
Catalytic activity : Enzyme3.6.4.13 [ Enzyme-Expasy ]   3.6.4.133.6.4.13 [ IntEnz-EBI ]   3.6.4.13 [ BRENDA ]   3.6.4.13 [ KEGG ]   [ MEROPS ]
PhosPhoSitePlusQ587J7
Domains : Interpro (EBI)DEAD/DEAH_box_helicase_dom    P-loop_NTPase    SNase_OB-fold_sf    Tudor   
Domain families : Pfam (Sanger)DEAD (PF00270)    TUDOR (PF00567)   
Domain families : Pfam (NCBI)pfam00270    pfam00567   
Conserved Domain (NCBI)TDRD12
SuperfamilyQ587J7
AlphaFold pdb e-kbQ587J7   
Human Protein Atlas [tissue]ENSG00000173809-TDRD12 [tissue]
Protein Interaction databases
DIP (DOE-UCLA)Q587J7
IntAct (EBI)Q587J7
BioGRIDTDRD12
STRING (EMBL)TDRD12
ZODIACTDRD12
Ontologies - Pathways
QuickGOQ587J7
Ontology : AmiGOmolecular_function  nucleic acid binding  RNA helicase activity  ATP binding  cellular_component  male meiotic nuclear division  multicellular organism development  spermatogenesis  fertilization  hydrolase activity  cell differentiation  gene silencing by RNA  piRNA metabolic process  DNA methylation involved in gamete generation  PET complex  
Ontology : EGO-EBImolecular_function  nucleic acid binding  RNA helicase activity  ATP binding  cellular_component  male meiotic nuclear division  multicellular organism development  spermatogenesis  fertilization  hydrolase activity  cell differentiation  gene silencing by RNA  piRNA metabolic process  DNA methylation involved in gamete generation  PET complex  
NDEx NetworkTDRD12
Atlas of Cancer Signalling NetworkTDRD12
Wikipedia pathwaysTDRD12
Orthology - Evolution
OrthoDB91646
GeneTree (enSembl)ENSG00000173809
Phylogenetic Trees/Animal Genes : TreeFamTDRD12
Homologs : HomoloGeneTDRD12
Homology/Alignments : Family Browser (UCSC)TDRD12
Gene fusions - Rearrangements
Fusion : QuiverTDRD12
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTDRD12 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TDRD12
dbVarTDRD12
ClinVarTDRD12
MonarchTDRD12
1000_GenomesTDRD12 
Exome Variant ServerTDRD12
GNOMAD BrowserENSG00000173809
Varsome BrowserTDRD12
ACMGTDRD12 variants
VarityQ587J7
Genomic Variants (DGV)TDRD12 [DGVbeta]
DECIPHERTDRD12 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTDRD12 
Mutations
ICGC Data PortalTDRD12 
TCGA Data PortalTDRD12 
Broad Tumor PortalTDRD12
OASIS PortalTDRD12 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTDRD12  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTDRD12
Mutations and Diseases : HGMDTDRD12
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTDRD12
DgiDB (Drug Gene Interaction Database)TDRD12
DoCM (Curated mutations)TDRD12
CIViC (Clinical Interpretations of Variants in Cancer)TDRD12
Cancer3DTDRD12
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTDRD12
MedgenTDRD12
Genetic Testing Registry TDRD12
NextProtQ587J7 [Medical]
GENETestsTDRD12
Target ValidationTDRD12
Huge Navigator TDRD12 [HugePedia]
ClinGenTDRD12
Clinical trials, drugs, therapy
MyCancerGenomeTDRD12
Protein Interactions : CTDTDRD12
Pharm GKB GenePA162405542
PharosQ587J7
Clinical trialTDRD12
Miscellaneous
canSAR (ICR)TDRD12
HarmonizomeTDRD12
DataMed IndexTDRD12
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTDRD12
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 16:25:07 CEST 2021

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