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TDRD15 (tudor domain containing 15)

Identity

Alias (NCBI)-
HGNC (Hugo) TDRD15
LocusID (NCBI) 100129278
Atlas_Id 77360
Location 2p24.1  [Link to chromosome band 2p24]
Location_base_pair Starts at 21123968 and ends at 21144368 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TDRD15   45037
Cards
Entrez_Gene (NCBI)TDRD15    tudor domain containing 15
Aliases
GeneCards (Weizmann)TDRD15
Ensembl hg19 (Hinxton)ENSG00000218819 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000218819 [Gene_View]  ENSG00000218819 [Sequence]  chr2:21123968-21144368 [Contig_View]  TDRD15 [Vega]
ICGC DataPortalENSG00000218819
TCGA cBioPortalTDRD15
AceView (NCBI)TDRD15
Genatlas (Paris)TDRD15
SOURCE (Princeton)TDRD15
Genetics Home Reference (NIH)TDRD15
Genomic and cartography
GoldenPath hg38 (UCSC)TDRD15  -     chr2:21123968-21144368 +  2p24.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TDRD15  -     2p24.1   [Description]    (hg19-Feb_2009)
GoldenPathTDRD15 - 2p24.1 [CytoView hg19]  TDRD15 - 2p24.1 [CytoView hg38]
ImmunoBaseENSG00000218819
Genome Data Viewer NCBITDRD15 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)BU854412 EG328743 EG328744
RefSeq transcript (Entrez)NM_001306137
Consensus coding sequences : CCDS (NCBI)TDRD15
Gene ExpressionTDRD15 [ NCBI-GEO ]   TDRD15 [ EBI - ARRAY_EXPRESS ]   TDRD15 [ SEEK ]   TDRD15 [ MEM ]
Gene Expression Viewer (FireBrowse)TDRD15 [ Firebrowse - Broad ]
GenevisibleExpression of TDRD15 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100129278
GTEX Portal (Tissue expression)TDRD15
Human Protein AtlasENSG00000218819-TDRD15 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtB5MCY1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtB5MCY1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProB5MCY1
PhosPhoSitePlusB5MCY1
Domaine pattern : Prosite (Expaxy)TUDOR (PS50304)   
Domains : Interpro (EBI)SNase_OB-fold_sf    Tudor   
Domain families : Pfam (Sanger)TUDOR (PF00567)   
Domain families : Pfam (NCBI)pfam00567   
Domain families : Smart (EMBL)TUDOR (SM00333)  
Conserved Domain (NCBI)TDRD15
SuperfamilyB5MCY1
AlphaFold pdb e-kbB5MCY1   
Human Protein Atlas [tissue]ENSG00000218819-TDRD15 [tissue]
Protein Interaction databases
DIP (DOE-UCLA)B5MCY1
IntAct (EBI)B5MCY1
BioGRIDTDRD15
STRING (EMBL)TDRD15
ZODIACTDRD15
Ontologies - Pathways
QuickGOB5MCY1
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkTDRD15
Atlas of Cancer Signalling NetworkTDRD15
Wikipedia pathwaysTDRD15
Orthology - Evolution
OrthoDB100129278
GeneTree (enSembl)ENSG00000218819
Phylogenetic Trees/Animal Genes : TreeFamTDRD15
Homologs : HomoloGeneTDRD15
Homology/Alignments : Family Browser (UCSC)TDRD15
Gene fusions - Rearrangements
Fusion : QuiverTDRD15
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTDRD15 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TDRD15
dbVarTDRD15
ClinVarTDRD15
MonarchTDRD15
1000_GenomesTDRD15 
Exome Variant ServerTDRD15
GNOMAD BrowserENSG00000218819
Varsome BrowserTDRD15
ACMGTDRD15 variants
VarityB5MCY1
Genomic Variants (DGV)TDRD15 [DGVbeta]
DECIPHERTDRD15 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTDRD15 
Mutations
ICGC Data PortalTDRD15 
TCGA Data PortalTDRD15 
Broad Tumor PortalTDRD15
OASIS PortalTDRD15 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTDRD15  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTDRD15
Mutations and Diseases : HGMDTDRD15
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTDRD15
DgiDB (Drug Gene Interaction Database)TDRD15
DoCM (Curated mutations)TDRD15
CIViC (Clinical Interpretations of Variants in Cancer)TDRD15
Cancer3DTDRD15
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTDRD15
MedgenTDRD15
Genetic Testing Registry TDRD15
NextProtB5MCY1 [Medical]
GENETestsTDRD15
Target ValidationTDRD15
Huge Navigator TDRD15 [HugePedia]
ClinGenTDRD15
Clinical trials, drugs, therapy
MyCancerGenomeTDRD15
Protein Interactions : CTDTDRD15
Pharm GKB GenePA166049156
PharosB5MCY1
Clinical trialTDRD15
Miscellaneous
canSAR (ICR)TDRD15
HarmonizomeTDRD15
DataMed IndexTDRD15
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTDRD15
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:25:07 CEST 2021

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