Atlas of Genetics and Cytogenetics in Oncology and Haematology


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TDRD15 (tudor domain containing 15)

Identity

Other alias-
HGNC (Hugo) TDRD15
LocusID (NCBI) 100129278
Atlas_Id 77360
Location 2p24.1  [Link to chromosome band 2p24]
Location_base_pair Starts at 21123986 and ends at 21144366 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TDRD15   45037
Cards
Entrez_Gene (NCBI)TDRD15  100129278  tudor domain containing 15
Aliases
GeneCards (Weizmann)TDRD15
Ensembl hg19 (Hinxton)ENSG00000218819 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000218819 [Gene_View]  chr2:21123986-21144366 [Contig_View]  TDRD15 [Vega]
ICGC DataPortalENSG00000218819
TCGA cBioPortalTDRD15
AceView (NCBI)TDRD15
Genatlas (Paris)TDRD15
WikiGenes100129278
SOURCE (Princeton)TDRD15
Genetics Home Reference (NIH)TDRD15
Genomic and cartography
GoldenPath hg38 (UCSC)TDRD15  -     chr2:21123986-21144366 +  2p24.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TDRD15  -     2p24.1   [Description]    (hg19-Feb_2009)
EnsemblTDRD15 - 2p24.1 [CytoView hg19]  TDRD15 - 2p24.1 [CytoView hg38]
Mapping of homologs : NCBITDRD15 [Mapview hg19]  TDRD15 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BU854412 EG328743 EG328744
RefSeq transcript (Entrez)NM_001306137
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TDRD15
Cluster EST : UnigeneHs.651096 [ NCBI ]
CGAP (NCI)Hs.651096
Alternative Splicing GalleryENSG00000218819
Gene ExpressionTDRD15 [ NCBI-GEO ]   TDRD15 [ EBI - ARRAY_EXPRESS ]   TDRD15 [ SEEK ]   TDRD15 [ MEM ]
Gene Expression Viewer (FireBrowse)TDRD15 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100129278
GTEX Portal (Tissue expression)TDRD15
Protein : pattern, domain, 3D structure
UniProt/SwissProtB5MCY1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtB5MCY1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProB5MCY1
Splice isoforms : SwissVarB5MCY1
PhosPhoSitePlusB5MCY1
Domaine pattern : Prosite (Expaxy)TUDOR (PS50304)   
Domains : Interpro (EBI)Staphylococal_nuclease_OB-fold    Tudor   
Domain families : Pfam (Sanger)TUDOR (PF00567)   
Domain families : Pfam (NCBI)pfam00567   
Domain families : Smart (EMBL)TUDOR (SM00333)  
Conserved Domain (NCBI)TDRD15
DMDM Disease mutations100129278
Blocks (Seattle)TDRD15
SuperfamilyB5MCY1
Human Protein AtlasENSG00000218819
Peptide AtlasB5MCY1
Protein Interaction databases
DIP (DOE-UCLA)B5MCY1
IntAct (EBI)B5MCY1
FunCoupENSG00000218819
BioGRIDTDRD15
STRING (EMBL)TDRD15
ZODIACTDRD15
Ontologies - Pathways
QuickGOB5MCY1
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkTDRD15
Atlas of Cancer Signalling NetworkTDRD15
Wikipedia pathwaysTDRD15
Orthology - Evolution
OrthoDB100129278
GeneTree (enSembl)ENSG00000218819
Phylogenetic Trees/Animal Genes : TreeFamTDRD15
HOVERGENB5MCY1
HOGENOMB5MCY1
Homologs : HomoloGeneTDRD15
Homology/Alignments : Family Browser (UCSC)TDRD15
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTDRD15 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TDRD15
dbVarTDRD15
ClinVarTDRD15
1000_GenomesTDRD15 
Exome Variant ServerTDRD15
ExAC (Exome Aggregation Consortium)TDRD15 (select the gene name)
Genetic variants : HAPMAP100129278
Genomic Variants (DGV)TDRD15 [DGVbeta]
DECIPHERTDRD15 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTDRD15 
Mutations
ICGC Data PortalTDRD15 
TCGA Data PortalTDRD15 
Broad Tumor PortalTDRD15
OASIS PortalTDRD15 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDTDRD15
BioMutasearch TDRD15
DgiDB (Drug Gene Interaction Database)TDRD15
DoCM (Curated mutations)TDRD15 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TDRD15 (select a term)
intoGenTDRD15
Cancer3DTDRD15(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTDRD15
Genetic Testing Registry TDRD15
NextProtB5MCY1 [Medical]
TSGene100129278
GENETestsTDRD15
Target ValidationTDRD15
Huge Navigator TDRD15 [HugePedia]
snp3D : Map Gene to Disease100129278
BioCentury BCIQTDRD15
ClinGenTDRD15
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100129278
Chemical/Pharm GKB GenePA166049156
Clinical trialTDRD15
Miscellaneous
canSAR (ICR)TDRD15 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTDRD15
EVEXTDRD15
GoPubMedTDRD15
iHOPTDRD15
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 16:41:22 CEST 2017

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