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TDRD3 (tudor domain containing 3)

Identity

Alias_symbol (synonym)FLJ21007
Other alias-
HGNC (Hugo) TDRD3
LocusID (NCBI) 81550
Atlas_Id 54697
Location 13q21.2  [Link to chromosome band 13q21]
Location_base_pair Starts at 60397293 and ends at 60573879 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
DIAPH3 (13q21.2) / TDRD3 (13q21.2)SLC26A7 (8q21.3) / TDRD3 (13q21.2)TDRD3 (13q21.2) / DIAPH3 (13q21.2)
TDRD3 (13q21.2) / ESD (13q14.2)TDRD3 (13q21.2) / LHFP (13q13.3)TDRD3 (13q21.2) / SERINC5 (5q14.1)
TDRD3 (13q21.2) / TDRD3 (13q21.2)DIAPH3 13q21.2 / TDRD3 13q21.2TDRD3 13q21.2 / DIAPH3 13q21.2
TDRD3 13q21.2 / ESD 13q14.2TDRD3 13q21.2 / LHFP 13q13.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TDRD3   20612
Cards
Entrez_Gene (NCBI)TDRD3  81550  tudor domain containing 3
Aliases
GeneCards (Weizmann)TDRD3
Ensembl hg19 (Hinxton)ENSG00000083544 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000083544 [Gene_View]  chr13:60397293-60573879 [Contig_View]  TDRD3 [Vega]
ICGC DataPortalENSG00000083544
TCGA cBioPortalTDRD3
AceView (NCBI)TDRD3
Genatlas (Paris)TDRD3
WikiGenes81550
SOURCE (Princeton)TDRD3
Genetics Home Reference (NIH)TDRD3
Genomic and cartography
GoldenPath hg38 (UCSC)TDRD3  -     chr13:60397293-60573879 +  13q21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TDRD3  -     13q21.2   [Description]    (hg19-Feb_2009)
EnsemblTDRD3 - 13q21.2 [CytoView hg19]  TDRD3 - 13q21.2 [CytoView hg38]
Mapping of homologs : NCBITDRD3 [Mapview hg19]  TDRD3 [Mapview hg38]
OMIM614392   
Gene and transcription
Genbank (Entrez)AA004370 AK023578 AK024660 AM392908 BC020604
RefSeq transcript (Entrez)NM_001146070 NM_001146071 NM_030794
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TDRD3
Cluster EST : UnigeneHs.525061 [ NCBI ]
CGAP (NCI)Hs.525061
Alternative Splicing GalleryENSG00000083544
Gene ExpressionTDRD3 [ NCBI-GEO ]   TDRD3 [ EBI - ARRAY_EXPRESS ]   TDRD3 [ SEEK ]   TDRD3 [ MEM ]
Gene Expression Viewer (FireBrowse)TDRD3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)81550
GTEX Portal (Tissue expression)TDRD3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H7E2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H7E2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H7E2
Splice isoforms : SwissVarQ9H7E2
PhosPhoSitePlusQ9H7E2
Domaine pattern : Prosite (Expaxy)TUDOR (PS50304)    UBA (PS50030)   
Domains : Interpro (EBI)RMI1_N    Tudor    UBA    UBA-like   
Domain families : Pfam (Sanger)RMI1_N (PF08585)    TUDOR (PF00567)    UBA (PF00627)   
Domain families : Pfam (NCBI)pfam08585    pfam00567    pfam00627   
Domain families : Smart (EMBL)TUDOR (SM00333)  UBA (SM00165)  
Conserved Domain (NCBI)TDRD3
DMDM Disease mutations81550
Blocks (Seattle)TDRD3
PDB (SRS)1WJI    2LTO    3PMT    3PNW    3S6W   
PDB (PDBSum)1WJI    2LTO    3PMT    3PNW    3S6W   
PDB (IMB)1WJI    2LTO    3PMT    3PNW    3S6W   
PDB (RSDB)1WJI    2LTO    3PMT    3PNW    3S6W   
Structural Biology KnowledgeBase1WJI    2LTO    3PMT    3PNW    3S6W   
SCOP (Structural Classification of Proteins)1WJI    2LTO    3PMT    3PNW    3S6W   
CATH (Classification of proteins structures)1WJI    2LTO    3PMT    3PNW    3S6W   
SuperfamilyQ9H7E2
Human Protein AtlasENSG00000083544
Peptide AtlasQ9H7E2
HPRD11625
IPIIPI00006571   IPI00929228   IPI00924692   IPI00977152   IPI00643828   
Protein Interaction databases
DIP (DOE-UCLA)Q9H7E2
IntAct (EBI)Q9H7E2
FunCoupENSG00000083544
BioGRIDTDRD3
STRING (EMBL)TDRD3
ZODIACTDRD3
Ontologies - Pathways
QuickGOQ9H7E2
Ontology : AmiGOchromatin binding  transcription coactivator activity  RNA binding  protein binding  nucleus  cytoplasm  covalent chromatin modification  methylated histone binding  exon-exon junction complex  regulation of nucleic acid-templated transcription  
Ontology : EGO-EBIchromatin binding  transcription coactivator activity  RNA binding  protein binding  nucleus  cytoplasm  covalent chromatin modification  methylated histone binding  exon-exon junction complex  regulation of nucleic acid-templated transcription  
NDEx NetworkTDRD3
Atlas of Cancer Signalling NetworkTDRD3
Wikipedia pathwaysTDRD3
Orthology - Evolution
OrthoDB81550
GeneTree (enSembl)ENSG00000083544
Phylogenetic Trees/Animal Genes : TreeFamTDRD3
HOVERGENQ9H7E2
HOGENOMQ9H7E2
Homologs : HomoloGeneTDRD3
Homology/Alignments : Family Browser (UCSC)TDRD3
Gene fusions - Rearrangements
Fusion : MitelmanDIAPH3/TDRD3 [13q21.2/13q21.2]  [t(13;13)(q21;q21)]  
Fusion : MitelmanTDRD3/DIAPH3 [13q21.2/13q21.2]  [t(13;13)(q21;q21)]  
Fusion : MitelmanTDRD3/ESD [13q21.2/13q14.2]  [t(13;13)(q14;q21)]  
Fusion : MitelmanTDRD3/LHFP [13q21.2/13q13.3]  [t(13;13)(q13;q21)]  
Fusion: TCGADIAPH3 13q21.2 TDRD3 13q21.2 BRCA
Fusion: TCGATDRD3 13q21.2 DIAPH3 13q21.2 BRCA
Fusion: TCGATDRD3 13q21.2 ESD 13q14.2 GBM
Fusion: TCGATDRD3 13q21.2 LHFP 13q13.3 BRCA
Fusion Cancer (Beijing)TDRD3 [13q21.2]  -  SERINC5 [5q14.1]  [FUSC003803]  [FUSC003803]
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTDRD3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TDRD3
dbVarTDRD3
ClinVarTDRD3
1000_GenomesTDRD3 
Exome Variant ServerTDRD3
ExAC (Exome Aggregation Consortium)TDRD3 (select the gene name)
Genetic variants : HAPMAP81550
Genomic Variants (DGV)TDRD3 [DGVbeta]
DECIPHERTDRD3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTDRD3 
Mutations
ICGC Data PortalTDRD3 
TCGA Data PortalTDRD3 
Broad Tumor PortalTDRD3
OASIS PortalTDRD3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTDRD3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTDRD3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TDRD3
DgiDB (Drug Gene Interaction Database)TDRD3
DoCM (Curated mutations)TDRD3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TDRD3 (select a term)
intoGenTDRD3
Cancer3DTDRD3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614392   
Orphanet
MedgenTDRD3
Genetic Testing Registry TDRD3
NextProtQ9H7E2 [Medical]
TSGene81550
GENETestsTDRD3
Target ValidationTDRD3
Huge Navigator TDRD3 [HugePedia]
snp3D : Map Gene to Disease81550
BioCentury BCIQTDRD3
ClinGenTDRD3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD81550
Chemical/Pharm GKB GenePA134962690
Clinical trialTDRD3
Miscellaneous
canSAR (ICR)TDRD3 (select the gene name)
Probes
Litterature
PubMed28 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTDRD3
EVEXTDRD3
GoPubMedTDRD3
iHOPTDRD3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 25 19:34:39 CEST 2017

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