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TDRD5 (tudor domain containing 5)

Identity

Alias_symbol (synonym)FLJ34823
TUDOR3
Other alias
HGNC (Hugo) TDRD5
LocusID (NCBI) 163589
Atlas_Id 74601
Location 1q25.2  [Link to chromosome band 1q25]
Location_base_pair Starts at 179591613 and ends at 179691273 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CEP350 (1q25.2) / TDRD5 (1q25.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TDRD5   20614
Cards
Entrez_Gene (NCBI)TDRD5  163589  tudor domain containing 5
AliasesTUDOR3
GeneCards (Weizmann)TDRD5
Ensembl hg19 (Hinxton)ENSG00000162782 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000162782 [Gene_View]  chr1:179591613-179691273 [Contig_View]  TDRD5 [Vega]
ICGC DataPortalENSG00000162782
TCGA cBioPortalTDRD5
AceView (NCBI)TDRD5
Genatlas (Paris)TDRD5
WikiGenes163589
SOURCE (Princeton)TDRD5
Genetics Home Reference (NIH)TDRD5
Genomic and cartography
GoldenPath hg38 (UCSC)TDRD5  -     chr1:179591613-179691273 +  1q25.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TDRD5  -     1q25.2   [Description]    (hg19-Feb_2009)
EnsemblTDRD5 - 1q25.2 [CytoView hg19]  TDRD5 - 1q25.2 [CytoView hg38]
Mapping of homologs : NCBITDRD5 [Mapview hg19]  TDRD5 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK092142 AK126889 AK127370 BC043368 BC065707
RefSeq transcript (Entrez)NM_001199085 NM_001199089 NM_001199091 NM_001199092 NM_001349923 NM_173533
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TDRD5
Cluster EST : UnigeneHs.739186 [ NCBI ]
CGAP (NCI)Hs.739186
Alternative Splicing GalleryENSG00000162782
Gene ExpressionTDRD5 [ NCBI-GEO ]   TDRD5 [ EBI - ARRAY_EXPRESS ]   TDRD5 [ SEEK ]   TDRD5 [ MEM ]
Gene Expression Viewer (FireBrowse)TDRD5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)163589
GTEX Portal (Tissue expression)TDRD5
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NAT2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NAT2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NAT2
Splice isoforms : SwissVarQ8NAT2
PhosPhoSitePlusQ8NAT2
Domaine pattern : Prosite (Expaxy)HTH_OST (PS51644)    TUDOR (PS50304)   
Domains : Interpro (EBI)OST-HTH/LOTUS_dom    Tudor   
Domain families : Pfam (Sanger)OST-HTH (PF12872)    TUDOR (PF00567)   
Domain families : Pfam (NCBI)pfam12872    pfam00567   
Domain families : Smart (EMBL)TUDOR (SM00333)  
Conserved Domain (NCBI)TDRD5
DMDM Disease mutations163589
Blocks (Seattle)TDRD5
PDB (SRS)3S93   
PDB (PDBSum)3S93   
PDB (IMB)3S93   
PDB (RSDB)3S93   
Structural Biology KnowledgeBase3S93   
SCOP (Structural Classification of Proteins)3S93   
CATH (Classification of proteins structures)3S93   
SuperfamilyQ8NAT2
Human Protein AtlasENSG00000162782
Peptide AtlasQ8NAT2
HPRD15483
IPIIPI00219978   IPI00829817   IPI00978144   
Protein Interaction databases
DIP (DOE-UCLA)Q8NAT2
IntAct (EBI)Q8NAT2
FunCoupENSG00000162782
BioGRIDTDRD5
STRING (EMBL)TDRD5
ZODIACTDRD5
Ontologies - Pathways
QuickGOQ8NAT2
Ontology : AmiGOspermatid development  P granule organization  chromatoid body  DNA methylation involved in gamete generation  pi-body  
Ontology : EGO-EBIspermatid development  P granule organization  chromatoid body  DNA methylation involved in gamete generation  pi-body  
NDEx NetworkTDRD5
Atlas of Cancer Signalling NetworkTDRD5
Wikipedia pathwaysTDRD5
Orthology - Evolution
OrthoDB163589
GeneTree (enSembl)ENSG00000162782
Phylogenetic Trees/Animal Genes : TreeFamTDRD5
HOVERGENQ8NAT2
HOGENOMQ8NAT2
Homologs : HomoloGeneTDRD5
Homology/Alignments : Family Browser (UCSC)TDRD5
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTDRD5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TDRD5
dbVarTDRD5
ClinVarTDRD5
1000_GenomesTDRD5 
Exome Variant ServerTDRD5
ExAC (Exome Aggregation Consortium)TDRD5 (select the gene name)
Genetic variants : HAPMAP163589
Genomic Variants (DGV)TDRD5 [DGVbeta]
DECIPHERTDRD5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTDRD5 
Mutations
ICGC Data PortalTDRD5 
TCGA Data PortalTDRD5 
Broad Tumor PortalTDRD5
OASIS PortalTDRD5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTDRD5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTDRD5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TDRD5
DgiDB (Drug Gene Interaction Database)TDRD5
DoCM (Curated mutations)TDRD5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TDRD5 (select a term)
intoGenTDRD5
Cancer3DTDRD5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTDRD5
Genetic Testing Registry TDRD5
NextProtQ8NAT2 [Medical]
TSGene163589
GENETestsTDRD5
Target ValidationTDRD5
Huge Navigator TDRD5 [HugePedia]
snp3D : Map Gene to Disease163589
BioCentury BCIQTDRD5
ClinGenTDRD5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD163589
Chemical/Pharm GKB GenePA134953461
Clinical trialTDRD5
Miscellaneous
canSAR (ICR)TDRD5 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTDRD5
EVEXTDRD5
GoPubMedTDRD5
iHOPTDRD5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:41:11 CEST 2017

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