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TDRD6 (tudor domain containing 6)

Identity

Alias_symbol (synonym)NY-CO-45
bA446F17.4
CT41.2
SPATA36
Other aliasTDR2
HGNC (Hugo) TDRD6
LocusID (NCBI) 221400
Atlas_Id 74602
Location 6p12.3  [Link to chromosome band 6p12]
Location_base_pair Starts at 46655612 and ends at 46672056 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TDRD6   21339
Cards
Entrez_Gene (NCBI)TDRD6  221400  tudor domain containing 6
AliasesCT41.2; NY-CO-45; SPATA36; TDR2; 
bA446F17.4
GeneCards (Weizmann)TDRD6
Ensembl hg19 (Hinxton)ENSG00000180113 [Gene_View]  chr6:46655612-46672056 [Contig_View]  TDRD6 [Vega]
Ensembl hg38 (Hinxton)ENSG00000180113 [Gene_View]  chr6:46655612-46672056 [Contig_View]  TDRD6 [Vega]
ICGC DataPortalENSG00000180113
TCGA cBioPortalTDRD6
AceView (NCBI)TDRD6
Genatlas (Paris)TDRD6
WikiGenes221400
SOURCE (Princeton)TDRD6
Genetics Home Reference (NIH)TDRD6
Genomic and cartography
GoldenPath hg19 (UCSC)TDRD6  -     chr6:46655612-46672056 +  6p12.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TDRD6  -     6p12.3   [Description]    (hg38-Dec_2013)
EnsemblTDRD6 - 6p12.3 [CytoView hg19]  TDRD6 - 6p12.3 [CytoView hg38]
Mapping of homologs : NCBITDRD6 [Mapview hg19]  TDRD6 [Mapview hg38]
OMIM611200   
Gene and transcription
Genbank (Entrez)AF039442 AK125838 AK131455 BC172752 BX648686
RefSeq transcript (Entrez)NM_001010870 NM_001168359
RefSeq genomic (Entrez)NC_000006 NC_018917 NT_007592 NW_004929326
Consensus coding sequences : CCDS (NCBI)TDRD6
Cluster EST : UnigeneHs.656983 [ NCBI ]
CGAP (NCI)Hs.656983
Alternative Splicing GalleryENSG00000180113
Gene ExpressionTDRD6 [ NCBI-GEO ]   TDRD6 [ EBI - ARRAY_EXPRESS ]   TDRD6 [ SEEK ]   TDRD6 [ MEM ]
Gene Expression Viewer (FireBrowse)TDRD6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)221400
GTEX Portal (Tissue expression)TDRD6
Protein : pattern, domain, 3D structure
UniProt/SwissProtO60522   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO60522  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO60522
Splice isoforms : SwissVarO60522
PhosPhoSitePlusO60522
Domaine pattern : Prosite (Expaxy)TUDOR (PS50304)   
Domains : Interpro (EBI)Tudor   
Domain families : Pfam (Sanger)TUDOR (PF00567)   
Domain families : Pfam (NCBI)pfam00567   
Domain families : Smart (EMBL)TUDOR (SM00333)  
Conserved Domain (NCBI)TDRD6
DMDM Disease mutations221400
Blocks (Seattle)TDRD6
SuperfamilyO60522
Human Protein AtlasENSG00000180113
Peptide AtlasO60522
HPRD18172
IPIIPI00030153   IPI00479182   IPI00954510   
Protein Interaction databases
DIP (DOE-UCLA)O60522
IntAct (EBI)O60522
FunCoupENSG00000180113
BioGRIDTDRD6
STRING (EMBL)TDRD6
ZODIACTDRD6
Ontologies - Pathways
QuickGOO60522
Ontology : AmiGOcytoplasm  endoplasmic reticulum  multicellular organismal development  germ cell development  spermatogenesis  gene expression  chromatoid body  piRNA metabolic process  P granule  
Ontology : EGO-EBIcytoplasm  endoplasmic reticulum  multicellular organismal development  germ cell development  spermatogenesis  gene expression  chromatoid body  piRNA metabolic process  P granule  
NDEx NetworkTDRD6
Atlas of Cancer Signalling NetworkTDRD6
Wikipedia pathwaysTDRD6
Orthology - Evolution
OrthoDB221400
GeneTree (enSembl)ENSG00000180113
Phylogenetic Trees/Animal Genes : TreeFamTDRD6
HOVERGENO60522
HOGENOMO60522
Homologs : HomoloGeneTDRD6
Homology/Alignments : Family Browser (UCSC)TDRD6
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTDRD6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TDRD6
dbVarTDRD6
ClinVarTDRD6
1000_GenomesTDRD6 
Exome Variant ServerTDRD6
ExAC (Exome Aggregation Consortium)TDRD6 (select the gene name)
Genetic variants : HAPMAP221400
Genomic Variants (DGV)TDRD6 [DGVbeta]
DECIPHER (Syndromes)6:46655612-46672056  ENSG00000180113
CONAN: Copy Number AnalysisTDRD6 
Mutations
ICGC Data PortalTDRD6 
TCGA Data PortalTDRD6 
Broad Tumor PortalTDRD6
OASIS PortalTDRD6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTDRD6  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTDRD6
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TDRD6
DgiDB (Drug Gene Interaction Database)TDRD6
DoCM (Curated mutations)TDRD6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TDRD6 (select a term)
intoGenTDRD6
Cancer3DTDRD6(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611200   
Orphanet
MedgenTDRD6
Genetic Testing Registry TDRD6
NextProtO60522 [Medical]
TSGene221400
GENETestsTDRD6
Huge Navigator TDRD6 [HugePedia]
snp3D : Map Gene to Disease221400
BioCentury BCIQTDRD6
ClinGenTDRD6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD221400
Chemical/Pharm GKB GenePA134945900
Clinical trialTDRD6
Miscellaneous
canSAR (ICR)TDRD6 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTDRD6
EVEXTDRD6
GoPubMedTDRD6
iHOPTDRD6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:47:46 CET 2017

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