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TDRD7 (tudor domain containing 7)

Identity

Alias_symbol (synonym)PCTAIRE2BP
Other aliasCATC4
TRAP
HGNC (Hugo) TDRD7
LocusID (NCBI) 23424
Atlas_Id 74603
Location 9q22.33  [Link to chromosome band 9q22]
Location_base_pair Starts at 97412020 and ends at 97496123 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
TDRD7 (9q22.33) / GNA14 (9q21.2)TDRD7 (9q22.33) / PRR16 (5q23.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TDRD7   30831
Cards
Entrez_Gene (NCBI)TDRD7  23424  tudor domain containing 7
AliasesCATC4; PCTAIRE2BP; TRAP
GeneCards (Weizmann)TDRD7
Ensembl hg19 (Hinxton)ENSG00000196116 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000196116 [Gene_View]  chr9:97412020-97496123 [Contig_View]  TDRD7 [Vega]
ICGC DataPortalENSG00000196116
TCGA cBioPortalTDRD7
AceView (NCBI)TDRD7
Genatlas (Paris)TDRD7
WikiGenes23424
SOURCE (Princeton)TDRD7
Genetics Home Reference (NIH)TDRD7
Genomic and cartography
GoldenPath hg38 (UCSC)TDRD7  -     chr9:97412020-97496123 +  9q22.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TDRD7  -     9q22.33   [Description]    (hg19-Feb_2009)
EnsemblTDRD7 - 9q22.33 [CytoView hg19]  TDRD7 - 9q22.33 [CytoView hg38]
Mapping of homologs : NCBITDRD7 [Mapview hg19]  TDRD7 [Mapview hg38]
OMIM611258   613887   
Gene and transcription
Genbank (Entrez)AB025254 AK294488 AK301954 AK310227 AK314853
RefSeq transcript (Entrez)NM_001302884 NM_014290
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TDRD7
Cluster EST : UnigeneHs.193842 [ NCBI ]
CGAP (NCI)Hs.193842
Alternative Splicing GalleryENSG00000196116
Gene ExpressionTDRD7 [ NCBI-GEO ]   TDRD7 [ EBI - ARRAY_EXPRESS ]   TDRD7 [ SEEK ]   TDRD7 [ MEM ]
Gene Expression Viewer (FireBrowse)TDRD7 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23424
GTEX Portal (Tissue expression)TDRD7
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NHU6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NHU6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NHU6
Splice isoforms : SwissVarQ8NHU6
PhosPhoSitePlusQ8NHU6
Domaine pattern : Prosite (Expaxy)HTH_OST (PS51644)    TUDOR (PS50304)   
Domains : Interpro (EBI)OST-HTH/LOTUS_dom    Tudor   
Domain families : Pfam (Sanger)OST-HTH (PF12872)    TUDOR (PF00567)   
Domain families : Pfam (NCBI)pfam12872    pfam00567   
Domain families : Smart (EMBL)TUDOR (SM00333)  
Conserved Domain (NCBI)TDRD7
DMDM Disease mutations23424
Blocks (Seattle)TDRD7
PDB (SRS)3RCO   
PDB (PDBSum)3RCO   
PDB (IMB)3RCO   
PDB (RSDB)3RCO   
Structural Biology KnowledgeBase3RCO   
SCOP (Structural Classification of Proteins)3RCO   
CATH (Classification of proteins structures)3RCO   
SuperfamilyQ8NHU6
Human Protein AtlasENSG00000196116
Peptide AtlasQ8NHU6
HPRD11626
IPIIPI00478741   IPI01010775   IPI00910151   
Protein Interaction databases
DIP (DOE-UCLA)Q8NHU6
IntAct (EBI)Q8NHU6
FunCoupENSG00000196116
BioGRIDTDRD7
STRING (EMBL)TDRD7
ZODIACTDRD7
Ontologies - Pathways
QuickGOQ8NHU6
Ontology : AmiGOlens morphogenesis in camera-type eye  mRNA binding  protein binding  cytoplasm  mitochondrial matrix  spermatogenesis  posttranscriptional regulation of gene expression  chromatoid body  ribonucleoprotein granule  protein N-terminus binding  lens fiber cell differentiation  
Ontology : EGO-EBIlens morphogenesis in camera-type eye  mRNA binding  protein binding  cytoplasm  mitochondrial matrix  spermatogenesis  posttranscriptional regulation of gene expression  chromatoid body  ribonucleoprotein granule  protein N-terminus binding  lens fiber cell differentiation  
NDEx NetworkTDRD7
Atlas of Cancer Signalling NetworkTDRD7
Wikipedia pathwaysTDRD7
Orthology - Evolution
OrthoDB23424
GeneTree (enSembl)ENSG00000196116
Phylogenetic Trees/Animal Genes : TreeFamTDRD7
HOVERGENQ8NHU6
HOGENOMQ8NHU6
Homologs : HomoloGeneTDRD7
Homology/Alignments : Family Browser (UCSC)TDRD7
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTDRD7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TDRD7
dbVarTDRD7
ClinVarTDRD7
1000_GenomesTDRD7 
Exome Variant ServerTDRD7
ExAC (Exome Aggregation Consortium)TDRD7 (select the gene name)
Genetic variants : HAPMAP23424
Genomic Variants (DGV)TDRD7 [DGVbeta]
DECIPHERTDRD7 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTDRD7 
Mutations
ICGC Data PortalTDRD7 
TCGA Data PortalTDRD7 
Broad Tumor PortalTDRD7
OASIS PortalTDRD7 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTDRD7  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTDRD7
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TDRD7
DgiDB (Drug Gene Interaction Database)TDRD7
DoCM (Curated mutations)TDRD7 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TDRD7 (select a term)
intoGenTDRD7
Cancer3DTDRD7(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611258    613887   
Orphanet
MedgenTDRD7
Genetic Testing Registry TDRD7
NextProtQ8NHU6 [Medical]
TSGene23424
GENETestsTDRD7
Huge Navigator TDRD7 [HugePedia]
snp3D : Map Gene to Disease23424
BioCentury BCIQTDRD7
ClinGenTDRD7
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD23424
Chemical/Pharm GKB GenePA134937960
Clinical trialTDRD7
Miscellaneous
canSAR (ICR)TDRD7 (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTDRD7
EVEXTDRD7
GoPubMedTDRD7
iHOPTDRD7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 11:57:41 CEST 2017

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