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TDRG1 (testis development related 1)

Identity

Alias (NCBI)LINC00532
lincRNA-NR_024015
HGNC (Hugo) TDRG1
HGNC Alias symbLINC00532
lincRNA-NR_024015
HGNC Alias namelong intergenic non-protein coding RNA 532
HGNC Previous nametestis development related 1 (non-protein coding)
LocusID (NCBI) 732253
Atlas_Id 52490
Location 6p21.2  [Link to chromosome band 6p21]
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TDRG1   43642
Cards
Entrez_Gene (NCBI)TDRG1    testis development related 1
AliasesLINC00532; lincRNA-NR_024015
GeneCards (Weizmann)TDRG1
Ensembl hg19 (Hinxton)ENSG00000204091 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000204091 [Gene_View]  ENSG00000204091 [Sequence]  - [Contig_View]  TDRG1 [Vega]
ICGC DataPortalENSG00000204091
TCGA cBioPortalTDRG1
AceView (NCBI)TDRG1
Genatlas (Paris)TDRG1
SOURCE (Princeton)TDRG1
Genetics Home Reference (NIH)TDRG1
Genomic and cartography
GoldenPath hg38 (UCSC)TDRG1  -  
GoldenPath hg19 (UCSC)TDRG1  -  
GoldenPathTDRG1 - [CytoView hg19]  TDRG1 - [CytoView hg38]
ImmunoBaseENSG00000204091
Genome Data Viewer NCBITDRG1 [Mapview hg19]  
OMIM615676   
Gene and transcription
Genbank (Entrez)AA446148 BC033995 BC042123 BC071820 DQ168992
RefSeq transcript (Entrez)NM_001359094 NM_001359095 NM_001359096
Consensus coding sequences : CCDS (NCBI)TDRG1
Gene ExpressionTDRG1 [ NCBI-GEO ]   TDRG1 [ EBI - ARRAY_EXPRESS ]   TDRG1 [ SEEK ]   TDRG1 [ MEM ]
Gene Expression Viewer (FireBrowse)TDRG1 [ Firebrowse - Broad ]
GenevisibleExpression of TDRG1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)732253
GTEX Portal (Tissue expression)TDRG1
Human Protein AtlasENSG00000204091-TDRG1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ3Y452   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ3Y452  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ3Y452
PhosPhoSitePlusQ3Y452
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TDRG1
SuperfamilyQ3Y452
AlphaFold pdb e-kbQ3Y452   
Human Protein Atlas [tissue]ENSG00000204091-TDRG1 [tissue]
Protein Interaction databases
DIP (DOE-UCLA)Q3Y452
IntAct (EBI)Q3Y452
BioGRIDTDRG1
STRING (EMBL)TDRG1
ZODIACTDRG1
Ontologies - Pathways
QuickGOQ3Y452
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkTDRG1
Atlas of Cancer Signalling NetworkTDRG1
Wikipedia pathwaysTDRG1
Orthology - Evolution
OrthoDB732253
GeneTree (enSembl)ENSG00000204091
Phylogenetic Trees/Animal Genes : TreeFamTDRG1
Homologs : HomoloGeneTDRG1
Homology/Alignments : Family Browser (UCSC)TDRG1
Gene fusions - Rearrangements
Fusion : QuiverTDRG1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTDRG1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TDRG1
dbVarTDRG1
ClinVarTDRG1
MonarchTDRG1
1000_GenomesTDRG1 
Exome Variant ServerTDRG1
GNOMAD BrowserENSG00000204091
Varsome BrowserTDRG1
ACMGTDRG1 variants
VarityQ3Y452
Genomic Variants (DGV)TDRG1 [DGVbeta]
DECIPHERTDRG1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTDRG1 
Mutations
ICGC Data PortalTDRG1 
TCGA Data PortalTDRG1 
Broad Tumor PortalTDRG1
OASIS PortalTDRG1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDTDRG1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTDRG1
DgiDB (Drug Gene Interaction Database)TDRG1
DoCM (Curated mutations)TDRG1
CIViC (Clinical Interpretations of Variants in Cancer)TDRG1
Cancer3DTDRG1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615676   
Orphanet
DisGeNETTDRG1
MedgenTDRG1
Genetic Testing Registry TDRG1
NextProtQ3Y452 [Medical]
GENETestsTDRG1
Target ValidationTDRG1
Huge Navigator TDRG1 [HugePedia]
ClinGenTDRG1
Clinical trials, drugs, therapy
MyCancerGenomeTDRG1
Protein Interactions : CTDTDRG1
PharosQ3Y452
Clinical trialTDRG1
Miscellaneous
canSAR (ICR)TDRG1
HarmonizomeTDRG1
DataMed IndexTDRG1
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTDRG1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 15:34:42 CEST 2021

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