Atlas of Genetics and Cytogenetics in Oncology and Haematology


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TDRG1 (testis development related 1)

Identity

Alias_symbol (synonym)LINC00532
lincRNA-NR_024015
Other alias
HGNC (Hugo) TDRG1
LocusID (NCBI) 732253
Atlas_Id 52490
Location 6p21.2  [Link to chromosome band 6p21]
Location_base_pair Starts at 40378337 and ends at 40379899 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TDRG1   43642
Cards
Entrez_Gene (NCBI)TDRG1  732253  testis development related 1
AliasesLINC00532; lincRNA-NR_024015
GeneCards (Weizmann)TDRG1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr6:40378337-40379899 [Contig_View]  TDRG1 [Vega]
TCGA cBioPortalTDRG1
AceView (NCBI)TDRG1
Genatlas (Paris)TDRG1
WikiGenes732253
SOURCE (Princeton)TDRG1
Genetics Home Reference (NIH)TDRG1
Genomic and cartography
GoldenPath hg38 (UCSC)TDRG1  -     chr6:40378337-40379899 +  6p21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TDRG1  -     6p21.2   [Description]    (hg19-Feb_2009)
EnsemblTDRG1 - 6p21.2 [CytoView hg19]  TDRG1 - 6p21.2 [CytoView hg38]
Mapping of homologs : NCBITDRG1 [Mapview hg19]  TDRG1 [Mapview hg38]
OMIM615676   
Gene and transcription
Genbank (Entrez)AA446148 BC033995 BC042123 BC071820 DQ168992
RefSeq transcript (Entrez)NM_001359094 NM_001359095 NM_001359096
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TDRG1
Cluster EST : UnigeneHs.180197 [ NCBI ]
CGAP (NCI)Hs.180197
Gene ExpressionTDRG1 [ NCBI-GEO ]   TDRG1 [ EBI - ARRAY_EXPRESS ]   TDRG1 [ SEEK ]   TDRG1 [ MEM ]
Gene Expression Viewer (FireBrowse)TDRG1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)732253
GTEX Portal (Tissue expression)TDRG1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ3Y452   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ3Y452  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ3Y452
Splice isoforms : SwissVarQ3Y452
PhosPhoSitePlusQ3Y452
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TDRG1
DMDM Disease mutations732253
Blocks (Seattle)TDRG1
SuperfamilyQ3Y452
Peptide AtlasQ3Y452
Protein Interaction databases
DIP (DOE-UCLA)Q3Y452
IntAct (EBI)Q3Y452
BioGRIDTDRG1
STRING (EMBL)TDRG1
ZODIACTDRG1
Ontologies - Pathways
QuickGOQ3Y452
Ontology : AmiGOcytoplasm  multicellular organism development  
Ontology : EGO-EBIcytoplasm  multicellular organism development  
NDEx NetworkTDRG1
Atlas of Cancer Signalling NetworkTDRG1
Wikipedia pathwaysTDRG1
Orthology - Evolution
OrthoDB732253
Phylogenetic Trees/Animal Genes : TreeFamTDRG1
HOVERGENQ3Y452
HOGENOMQ3Y452
Homologs : HomoloGeneTDRG1
Homology/Alignments : Family Browser (UCSC)TDRG1
Gene fusions - Rearrangements
Fusion : QuiverTDRG1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTDRG1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TDRG1
dbVarTDRG1
ClinVarTDRG1
1000_GenomesTDRG1 
Exome Variant ServerTDRG1
Varsome BrowserTDRG1
Genetic variants : HAPMAP732253
Genomic Variants (DGV)TDRG1 [DGVbeta]
DECIPHERTDRG1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTDRG1 
Mutations
ICGC Data PortalTDRG1 
TCGA Data PortalTDRG1 
Broad Tumor PortalTDRG1
OASIS PortalTDRG1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDTDRG1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TDRG1
DgiDB (Drug Gene Interaction Database)TDRG1
DoCM (Curated mutations)TDRG1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TDRG1 (select a term)
intoGenTDRG1
Cancer3DTDRG1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615676   
Orphanet
DisGeNETTDRG1
MedgenTDRG1
Genetic Testing Registry TDRG1
NextProtQ3Y452 [Medical]
TSGene732253
GENETestsTDRG1
Target ValidationTDRG1
Huge Navigator TDRG1 [HugePedia]
snp3D : Map Gene to Disease732253
BioCentury BCIQTDRG1
ClinGenTDRG1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD732253
Clinical trialTDRG1
Miscellaneous
canSAR (ICR)TDRG1 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTDRG1
EVEXTDRG1
GoPubMedTDRG1
iHOPTDRG1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 6 11:44:27 CET 2018

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