Atlas of Genetics and Cytogenetics in Oncology and Haematology


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TDRKH-AS1 (TDRKH antisense RNA 1)

Identity

Alias_symbol (synonym)RP11-98D18.9
Other alias-
HGNC (Hugo) TDRKH-AS1
LocusID (NCBI) 109729141
Atlas_Id 79199
Location 1q21.3  [Link to chromosome band 1q21]
Location_base_pair Starts at 151790749 and ends at 151794402 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TDRKH-AS1   40578
Cards
Entrez_Gene (NCBI)TDRKH-AS1  109729141  TDRKH antisense RNA 1
Aliases
GeneCards (Weizmann)TDRKH-AS1
Ensembl hg19 (Hinxton)ENSG00000203288 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000203288 [Gene_View]  chr1:151790749-151794402 [Contig_View]  TDRKH-AS1 [Vega]
ICGC DataPortalENSG00000203288
TCGA cBioPortalTDRKH-AS1
AceView (NCBI)TDRKH-AS1
Genatlas (Paris)TDRKH-AS1
WikiGenes109729141
SOURCE (Princeton)TDRKH-AS1
Genetics Home Reference (NIH)TDRKH-AS1
Genomic and cartography
GoldenPath hg38 (UCSC)TDRKH-AS1  -     chr1:151790749-151794402 +  1q21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TDRKH-AS1  -     1q21.3   [Description]    (hg19-Feb_2009)
EnsemblTDRKH-AS1 - 1q21.3 [CytoView hg19]  TDRKH-AS1 - 1q21.3 [CytoView hg38]
Mapping of homologs : NCBITDRKH-AS1 [Mapview hg19]  TDRKH-AS1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC038201 BM987302 DA120250 HY230420
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TDRKH-AS1
Cluster EST : UnigeneHs.439525 [ NCBI ]
CGAP (NCI)Hs.439525
Alternative Splicing GalleryENSG00000203288
Gene ExpressionTDRKH-AS1 [ NCBI-GEO ]   TDRKH-AS1 [ EBI - ARRAY_EXPRESS ]   TDRKH-AS1 [ SEEK ]   TDRKH-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)TDRKH-AS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)109729141
GTEX Portal (Tissue expression)TDRKH-AS1
Human Protein AtlasENSG00000203288-TDRKH-AS1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TDRKH-AS1
DMDM Disease mutations109729141
Blocks (Seattle)TDRKH-AS1
Human Protein Atlas [tissue]ENSG00000203288-TDRKH-AS1 [tissue]
Protein Interaction databases
FunCoupENSG00000203288
BioGRIDTDRKH-AS1
STRING (EMBL)TDRKH-AS1
ZODIACTDRKH-AS1
Ontologies - Pathways
Huge Navigator TDRKH-AS1 [HugePedia]
snp3D : Map Gene to Disease109729141
BioCentury BCIQTDRKH-AS1
ClinGenTDRKH-AS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD109729141
Clinical trialTDRKH-AS1
Miscellaneous
canSAR (ICR)TDRKH-AS1 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTDRKH-AS1
EVEXTDRKH-AS1
GoPubMedTDRKH-AS1
iHOPTDRKH-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:03:20 CET 2017

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