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TDRKH (tudor and KH domain containing)

Identity

Alias_namestudor and KH domain containing
Alias_symbol (synonym)TDRD2
Other alias
HGNC (Hugo) TDRKH
LocusID (NCBI) 11022
Atlas_Id 74605
Location 1q21.3  [Link to chromosome band 1q21]
Location_base_pair Starts at 151773480 and ends at 151790534 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
NDUFB9 (8q24.13) / TDRKH (1q21.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TDRKH   11713
Cards
Entrez_Gene (NCBI)TDRKH  11022  tudor and KH domain containing
AliasesTDRD2
GeneCards (Weizmann)TDRKH
Ensembl hg19 (Hinxton)ENSG00000182134 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000182134 [Gene_View]  chr1:151773480-151790534 [Contig_View]  TDRKH [Vega]
ICGC DataPortalENSG00000182134
TCGA cBioPortalTDRKH
AceView (NCBI)TDRKH
Genatlas (Paris)TDRKH
WikiGenes11022
SOURCE (Princeton)TDRKH
Genetics Home Reference (NIH)TDRKH
Genomic and cartography
GoldenPath hg38 (UCSC)TDRKH  -     chr1:151773480-151790534 -  1q21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TDRKH  -     1q21.3   [Description]    (hg19-Feb_2009)
EnsemblTDRKH - 1q21.3 [CytoView hg19]  TDRKH - 1q21.3 [CytoView hg38]
Mapping of homologs : NCBITDRKH [Mapview hg19]  TDRKH [Mapview hg38]
OMIM609501   
Gene and transcription
Genbank (Entrez)AF119121 AF227192 AK056402 AK225160 AK226092
RefSeq transcript (Entrez)NM_001083963 NM_001083964 NM_001083965 NM_006862
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TDRKH
Cluster EST : UnigeneHs.144439 [ NCBI ]
CGAP (NCI)Hs.144439
Alternative Splicing GalleryENSG00000182134
Gene ExpressionTDRKH [ NCBI-GEO ]   TDRKH [ EBI - ARRAY_EXPRESS ]   TDRKH [ SEEK ]   TDRKH [ MEM ]
Gene Expression Viewer (FireBrowse)TDRKH [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)11022
GTEX Portal (Tissue expression)TDRKH
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y2W6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y2W6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y2W6
Splice isoforms : SwissVarQ9Y2W6
PhosPhoSitePlusQ9Y2W6
Domaine pattern : Prosite (Expaxy)KH_TYPE_1 (PS50084)    TUDOR (PS50304)   
Domains : Interpro (EBI)KH_dom    KH_dom_type_1    Tudor4/A>&jbSp;  
Domain families : Pfam (Sanger)KH_1 (PF00013)    TUDOR (PF00567)   
Domain families : Pfam (NCBI)pfam00013    pfam00567   
Domain families : Smart (EMBL)KH (SM00322)  TUDOR (SM00333)  
Conserved Domain (NCBI)TDRKH
DMDM Disease mutations11022
Blocks (Seattle)TDRKH
PDB (SRS)2DIQ    3FDR    5J39   
PDB (PDBSum)2DIQ    3FDR    5J39   
PDB (IMB)2DIQ    3FDR    5J39   
PDB (RSDB)2DIQ    3FDR    5J39   
Structural Biology KnowledgeBase2DIQ    3FDR    5J39   
SCOP (Structural Classification of Proteins)2DIQ    3FDR    5J39   
CATH (Classification of proteins structures)2DIQ    3FDR    5J39   
SuperfamilyQ9Y2W6
Human Protein AtlasENSG00000182134
Peptide AtlasQ9Y2W6
HPRD15485
IPIIPI01013931   IPI01016034   IPI00009982   IPI00642210   IPI00922525   IPI00981760   IPI00982331   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y2W6
IntAct (EBI)Q9Y2W6
FunCoupENSG00000182134
BioGRIDTDRKH
STRING (EMBL)TDRKH
ZODIACTDRKH
Ontologies - Pathways
QuickGOQ9Y2W6
Ontology : AmiGORNA binding  mitochondrion  male meiotic nuclear division  spermatogenesis  fertilization  cell differentiation  gene silencing by RNA  piRNA metabolic process  DNA methylation involved in gamete generation  pi-body  piP-body  
Ontology : EGO-EBIRNA binding  mitochondrion  male meiotic nuclear division  spermatogenesis  fertilization  cell differentiation  gene silencing by RNA  piRNA metabolic process  DNA methylation involved in gamete generation  pi-body  piP-body  
NDEx NetworkTDRKH
Atlas of Cancer Signalling NetworkTDRKH
Wikipedia pathwaysTDRKH
Orthology - Evolution
OrthoDB11022
GeneTree (enSembl)ENSG00000182134
Phylogenetic Trees/Animal Genes : TreeFamTDRKH
HOVERGENQ9Y2W6
HOGENOMQ9Y2W6
Homologs : HomoloGeneTDRKH
Homology/Alignments : Family Browser (UCSC)TDRKH
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTDRKH [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TDRKH
dbVarTDRKH
ClinVarTDRKH
1000_GenomesTDRKH 
Exome Variant ServerTDRKH
ExAC (Exome Aggregation Consortium)TDRKH (select the gene name)
Genetic variants : HAPMAP11022
Genomic Variants (DGV)TDRKH [DGVbeta]
DECIPHERTDRKH [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTDRKH 
Mutations
ICGC Data PortalTDRKH 
TCGA Data PortalTDRKH 
Broad Tumor PortalTDRKH
OASIS PortalTDRKH [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTDRKH  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTDRKH
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch TDRKH
DgiDB (Drug Gene Interaction Database)TDRKH
DoCM (Curated mutations)TDRKH (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TDRKH (select a term)
intoGenTDRKH
Cancer3DTDRKH(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609501   
Orphanet
MedgenTDRKH
Genetic Testing Registry TDRKH
NextProtQ9Y2W6 [Medical]
TSGene11022
GENETestsTDRKH
Target ValidationTDRKH
Huge Navigator TDRKH [HugePedia]
snp3D : Map Gene to Disease11022
BioCentury BCIQTDRKH
ClinGenTDRKH
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD11022
Chemical/Pharm GKB GenePA36431
Clinical trialTDRKH
Miscellaneous
canSAR (ICR)TDRKH (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTDRKH
EVEXTDRKH
GoPubMedTDRKH
iHOPTDRKH
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:41:12 CEST 2017

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