Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TDRP (testis development related protein)

Identity

Alias_namesC8orf42
chromosome 8 open reading frame 42
Alias_symbol (synonym)INM01
TDRP1
TDRP2
Other aliasInm01
HGNC (Hugo) TDRP
LocusID (NCBI) 157695
Atlas_Id 74606
Location 8p23.3  [Link to chromosome band 8p23]
Location_base_pair Starts at 489790 and ends at 544845 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
FUT10 (8p12) / TDRP (8p23.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TDRP   26951
Cards
Entrez_Gene (NCBI)TDRP  157695  testis development related protein
AliasesC8orf42; Inm01; TDRP1; TDRP2
GeneCards (Weizmann)TDRP
Ensembl hg19 (Hinxton)ENSG00000180190 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000180190 [Gene_View]  chr8:489790-544845 [Contig_View]  TDRP [Vega]
ICGC DataPortalENSG00000180190
TCGA cBioPortalTDRP
AceView (NCBI)TDRP
Genatlas (Paris)TDRP
WikiGenes157695
SOURCE (Princeton)TDRP
Genetics Home Reference (NIH)TDRP
Genomic and cartography
GoldenPath hg38 (UCSC)TDRP  -     chr8:489790-544845 -  8p23.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TDRP  -     8p23.3   [Description]    (hg19-Feb_2009)
EnsemblTDRP - 8p23.3 [CytoView hg19]  TDRP - 8p23.3 [CytoView hg38]
Mapping of homologs : NCBITDRP [Mapview hg19]  TDRP [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK126209 AY194292 BC033779 BC136248 BC136249
RefSeq transcript (Entrez)NM_001256113 NM_175075
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TDRP
Cluster EST : UnigeneHs.289293 [ NCBI ]
CGAP (NCI)Hs.289293
Alternative Splicing GalleryENSG00000180190
Gene ExpressionTDRP [ NCBI-GEO ]   TDRP [ EBI - ARRAY_EXPRESS ]   TDRP [ SEEK ]   TDRP [ MEM ]
Gene Expression Viewer (FireBrowse)TDRP [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)157695
GTEX Portal (Tissue expression)TDRP
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86YL5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86YL5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86YL5
Splice isoforms : SwissVarQ86YL5
PhosPhoSitePlusQ86YL5
Domains : Interpro (EBI)TDRP   
Domain families : Pfam (Sanger)TDRP (PF15683)   
Domain families : Pfam (NCBI)pfam15683   
Conserved Domain (NCBI)TDRP
DMDM Disease mutations157695
Blocks (Seattle)TDRP
SuperfamilyQ86YL5
Human Protein AtlasENSG00000180190
Peptide AtlasQ86YL5
HPRD13740
IPIIPI00180267   IPI00915440   
Protein Interaction databases
DIP (DOE-UCLA)Q86YL5
IntAct (EBI)Q86YL5
FunCoupENSG00000180190
BioGRIDTDRP
STRING (EMBL)TDRP
ZODIACTDRP
Ontologies - Pathways
QuickGOQ86YL5
Ontology : AmiGOmolecular_function  nucleus  cytoplasm  cytosol  spermatogenesis  intracellular membrane-bounded organelle  
Ontology : EGO-EBImolecular_function  nucleus  cytoplasm  cytosol  spermatogenesis  intracellular membrane-bounded organelle  
NDEx NetworkTDRP
Atlas of Cancer Signalling NetworkTDRP
Wikipedia pathwaysTDRP
Orthology - Evolution
OrthoDB157695
GeneTree (enSembl)ENSG00000180190
Phylogenetic Trees/Animal Genes : TreeFamTDRP
HOVERGENQ86YL5
HOGENOMQ86YL5
Homologs : HomoloGeneTDRP
Homology/Alignments : Family Browser (UCSC)TDRP
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTDRP [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TDRP
dbVarTDRP
ClinVarTDRP
1000_GenomesTDRP 
Exome Variant ServerTDRP
ExAC (Exome Aggregation Consortium)TDRP (select the gene name)
Genetic variants : HAPMAP157695
Genomic Variants (DGV)TDRP [DGVbeta]
DECIPHERTDRP [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTDRP 
Mutations
ICGC Data PortalTDRP 
TCGA Data PortalTDRP 
Broad Tumor PortalTDRP
OASIS PortalTDRP [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDTDRP
BioMutasearch TDRP
DgiDB (Drug Gene Interaction Database)TDRP
DoCM (Curated mutations)TDRP (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TDRP (select a term)
intoGenTDRP
Cancer3DTDRP(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTDRP
Genetic Testing Registry TDRP
NextProtQ86YL5 [Medical]
TSGene157695
GENETestsTDRP
Target ValidationTDRP
Huge Navigator TDRP [HugePedia]
snp3D : Map Gene to Disease157695
BioCentury BCIQTDRP
ClinGenTDRP
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD157695
Chemical/Pharm GKB GenePA142672361
Clinical trialTDRP
Miscellaneous
canSAR (ICR)TDRP (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTDRP
EVEXTDRP
GoPubMedTDRP
iHOPTDRP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 31 15:45:11 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.