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TDRP (testis development related protein)

Identity

Alias (NCBI)C8orf42
Inm01
TDRP1
TDRP2
HGNC (Hugo) TDRP
HGNC Alias symbINM01
TDRP1
TDRP2
HGNC Previous nameC8orf42
HGNC Previous namechromosome 8 open reading frame 42
LocusID (NCBI) 157695
Atlas_Id 74606
Location 8p23.3  [Link to chromosome band 8p23]
Location_base_pair Starts at 489790 and ends at 545781 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
FUT10 (8p12) / TDRP (8p23.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TDRP   26951
Cards
Entrez_Gene (NCBI)TDRP    testis development related protein
AliasesC8orf42; Inm01; TDRP1; TDRP2
GeneCards (Weizmann)TDRP
Ensembl hg19 (Hinxton)ENSG00000180190 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000180190 [Gene_View]  ENSG00000180190 [Sequence]  chr8:489790-545781 [Contig_View]  TDRP [Vega]
ICGC DataPortalENSG00000180190
TCGA cBioPortalTDRP
AceView (NCBI)TDRP
Genatlas (Paris)TDRP
SOURCE (Princeton)TDRP
Genetics Home Reference (NIH)TDRP
Genomic and cartography
GoldenPath hg38 (UCSC)TDRP  -     chr8:489790-545781 -  8p23.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TDRP  -     8p23.3   [Description]    (hg19-Feb_2009)
GoldenPathTDRP - 8p23.3 [CytoView hg19]  TDRP - 8p23.3 [CytoView hg38]
ImmunoBaseENSG00000180190
Genome Data Viewer NCBITDRP [Mapview hg19]  
OMIM619049   
Gene and transcription
Genbank (Entrez)AK126209 AY194292 BC033779 BC136248 BC136249
RefSeq transcript (Entrez)NM_001256113 NM_001369716 NM_001384899 NM_175075
Consensus coding sequences : CCDS (NCBI)TDRP
Gene ExpressionTDRP [ NCBI-GEO ]   TDRP [ EBI - ARRAY_EXPRESS ]   TDRP [ SEEK ]   TDRP [ MEM ]
Gene Expression Viewer (FireBrowse)TDRP [ Firebrowse - Broad ]
GenevisibleExpression of TDRP in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)157695
GTEX Portal (Tissue expression)TDRP
Human Protein AtlasENSG00000180190-TDRP [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86YL5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86YL5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86YL5
PhosPhoSitePlusQ86YL5
Domains : Interpro (EBI)TDRP   
Domain families : Pfam (Sanger)TDRP (PF15683)   
Domain families : Pfam (NCBI)pfam15683   
Conserved Domain (NCBI)TDRP
SuperfamilyQ86YL5
AlphaFold pdb e-kbQ86YL5   
Human Protein Atlas [tissue]ENSG00000180190-TDRP [tissue]
HPRD13740
Protein Interaction databases
DIP (DOE-UCLA)Q86YL5
IntAct (EBI)Q86YL5
BioGRIDTDRP
STRING (EMBL)TDRP
ZODIACTDRP
Ontologies - Pathways
QuickGOQ86YL5
Ontology : AmiGOmolecular_function  nucleus  nucleus  cytoplasm  cytosol  cytosol  spermatogenesis  spermatogenesis  intracellular membrane-bounded organelle  
Ontology : EGO-EBImolecular_function  nucleus  nucleus  cytoplasm  cytosol  cytosol  spermatogenesis  spermatogenesis  intracellular membrane-bounded organelle  
NDEx NetworkTDRP
Atlas of Cancer Signalling NetworkTDRP
Wikipedia pathwaysTDRP
Orthology - Evolution
OrthoDB157695
GeneTree (enSembl)ENSG00000180190
Phylogenetic Trees/Animal Genes : TreeFamTDRP
Homologs : HomoloGeneTDRP
Homology/Alignments : Family Browser (UCSC)TDRP
Gene fusions - Rearrangements
Fusion : QuiverTDRP
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTDRP [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TDRP
dbVarTDRP
ClinVarTDRP
MonarchTDRP
1000_GenomesTDRP 
Exome Variant ServerTDRP
GNOMAD BrowserENSG00000180190
Varsome BrowserTDRP
ACMGTDRP variants
VarityQ86YL5
Genomic Variants (DGV)TDRP [DGVbeta]
DECIPHERTDRP [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTDRP 
Mutations
ICGC Data PortalTDRP 
TCGA Data PortalTDRP 
Broad Tumor PortalTDRP
OASIS PortalTDRP [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTDRP  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTDRP
Mutations and Diseases : HGMDTDRP
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTDRP
DgiDB (Drug Gene Interaction Database)TDRP
DoCM (Curated mutations)TDRP
CIViC (Clinical Interpretations of Variants in Cancer)TDRP
Cancer3DTDRP
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM619049   
Orphanet
DisGeNETTDRP
MedgenTDRP
Genetic Testing Registry TDRP
NextProtQ86YL5 [Medical]
GENETestsTDRP
Target ValidationTDRP
Huge Navigator TDRP [HugePedia]
ClinGenTDRP
Clinical trials, drugs, therapy
MyCancerGenomeTDRP
Protein Interactions : CTDTDRP
Pharm GKB GenePA142672361
PharosQ86YL5
Clinical trialTDRP
Miscellaneous
canSAR (ICR)TDRP
HarmonizomeTDRP
DataMed IndexTDRP
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTDRP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 16:25:08 CEST 2021

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