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TEC (transient erythroblastopenia of childhood)

Identity

Alias (NCBI)-
HGNC (Hugo) -
HGNC Alias symbPSCTK4
LocusID (NCBI) 100124696
Atlas_Id 42515
Location 4p12  [Link to chromosome band 4p12]
Location_base_pair Starts at 48135783 and ends at 48269838 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
TEC - / NCAM2 21q21.1TEC - / PASD1 Xq28

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)-   -
Cards
Entrez_Gene (NCBI)TEC    transient erythroblastopenia of childhood
Aliases
GeneCards (Weizmann)TEC
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr4:48135783-48269838 [Contig_View]  TEC [Vega]
TCGA cBioPortalTEC
AceView (NCBI)TEC
Genatlas (Paris)TEC
SOURCE (Princeton)TEC
Genetics Home Reference (NIH)TEC
Genomic and cartography
GoldenPath hg38 (UCSC)TEC  -     chr4:48135783-48269838 -  4p12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TEC  -     4p12   [Description]    (hg19-Feb_2009)
GoldenPathTEC - 4p12 [CytoView hg19]  TEC - 4p12 [CytoView hg38]
Genome Data Viewer NCBITEC [Mapview hg19]  
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)
Consensus coding sequences : CCDS (NCBI)TEC
Gene ExpressionTEC [ NCBI-GEO ]   TEC [ EBI - ARRAY_EXPRESS ]   TEC [ SEEK ]   TEC [ MEM ]
Gene Expression Viewer (FireBrowse)TEC [ Firebrowse - Broad ]
GenevisibleExpression of TEC in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100124696
GTEX Portal (Tissue expression)TEC
Protein : pattern, domain, 3D structure
UniProt/SwissProtP42680   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP42680  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP42680
PhosPhoSitePlusP42680
Domaine pattern : Prosite (Expaxy)PH_DOMAIN (PS50003)    PROTEIN_KINASE_ATP (PS00107)    PROTEIN_KINASE_DOM (PS50011)    PROTEIN_KINASE_TYR (PS00109)    SH2 (PS50001)    SH3 (PS50002)    ZF_BTK (PS51113)   
Domains : Interpro (EBI)Kinase-like_dom_sf    PH-like_dom_sf    PH_domain    Prot_kinase_dom    Protein_kinase_ATP_BS    Ser-Thr/Tyr_kinase_cat_dom    SH2    SH2_dom_sf    SH3-like_dom_sf    SH3_domain    Tec_SH3    Tyr_kinase_AS    Tyr_kinase_cat_dom    Znf_Btk_motif   
Domain families : Pfam (Sanger)BTK (PF00779)    PH (PF00169)    PK_Tyr_Ser-Thr (PF07714)    SH2 (PF00017)    SH3_1 (PF00018)   
Domain families : Pfam (NCBI)pfam00779    pfam00169    pfam07714    pfam00017    pfam00018   
Domain families : Smart (EMBL)BTK (SM00107)  PH (SM00233)  SH2 (SM00252)  SH3 (SM00326)  TyrKc (SM00219)  
Conserved Domain (NCBI)TEC
PDB (RSDB)2LUL   
PDB Europe2LUL   
PDB (PDBSum)2LUL   
PDB (IMB)2LUL   
Structural Biology KnowledgeBase2LUL   
SCOP (Structural Classification of Proteins)2LUL   
CATH (Classification of proteins structures)2LUL   
SuperfamilyP42680
AlphaFold pdb e-kbP42680   
Protein Interaction databases
DIP (DOE-UCLA)P42680
IntAct (EBI)P42680
BioGRIDTEC
STRING (EMBL)TEC
ZODIACTEC
Ontologies - Pathways
QuickGOP42680
Ontology : AmiGO
Ontology : EGO-EBI
Pathways : KEGGOsteoclast differentiation    T cell receptor signaling pathway   
NDEx NetworkTEC
Atlas of Cancer Signalling NetworkTEC
Wikipedia pathwaysTEC
Orthology - Evolution
OrthoDB100124696
Phylogenetic Trees/Animal Genes : TreeFam-
Homologs : HomoloGeneTEC
Homology/Alignments : Family Browser (UCSC)TEC
Gene fusions - Rearrangements
Fusion : MitelmanTEC/NCAM2 [-/21q21.1]  
Fusion : QuiverTEC
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTEC [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TEC
dbVarTEC
ClinVarTEC
Monarch-
1000_GenomesTEC 
Exome Variant ServerTEC
Varsome BrowserTEC
ACMGTEC variants
VarityP42680
Genomic Variants (DGV)TEC [DGVbeta]
DECIPHERTEC [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTEC 
Mutations
ICGC Data Portal- 
TCGA Data Portal- 
Broad Tumor Portal-
OASIS Portal- [ Somatic mutations - Copy number]
Cancer Gene: CensusTEC 
Somatic Mutations in Cancer : COSMICTEC  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTEC
Mutations and Diseases : HGMD-
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTEC
DgiDB (Drug Gene Interaction Database)TEC
DoCM (Curated mutations)TEC
CIViC (Clinical Interpretations of Variants in Cancer)TEC
Cancer3DTEC
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTEC
MedgenTEC
Genetic Testing Registry TEC
NextProtP42680 [Medical]
GENETestsTEC
Target ValidationTEC
Huge Navigator TEC [HugePedia]
ClinGenTEC
Clinical trials, drugs, therapy
MyCancerGenomeTEC
Protein Interactions : CTDTEC
Pharm GKB GenePA36436
PharosP42680
Clinical trialTEC
Miscellaneous
canSAR (ICR)TEC
HarmonizomeTEC
DataMed IndexTEC
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTEC
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 15:34:43 CEST 2021

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