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TEC (transient erythroblastopenia of childhood)

Identity

Alias_symbol (synonym)PSCTK4
Other alias-
HGNC (Hugo) -
LocusID (NCBI) 100124696
Atlas_Id 42515
Location 19q13.2  [Link to chromosome band 19q13]
Fusion genes
(updated 2016)
TEC - / NCAM2 21q21.1TEC - / PASD1 Xq28

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)-   -
Cards
Entrez_Gene (NCBI)TEC  100124696  transient erythroblastopenia of childhood
Aliases
GeneCards (Weizmann)TEC
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  - [Contig_View]  TEC [Vega]
TCGA cBioPortalTEC
AceView (NCBI)TEC
Genatlas (Paris)TEC
WikiGenes100124696
SOURCE (Princeton)TEC
Genetics Home Reference (NIH)TEC
Genomic and cartography
GoldenPath hg38 (UCSC)TEC  -  
GoldenPath hg19 (UCSC)TEC  -  
EnsemblTEC - [CytoView hg19]  TEC - [CytoView hg38]
Mapping of homologs : NCBITEC [Mapview hg19]  TEC [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TEC
Gene ExpressionTEC [ NCBI-GEO ]   TEC [ EBI - ARRAY_EXPRESS ]   TEC [ SEEK ]   TEC [ MEM ]
Gene Expression Viewer (FireBrowse)TEC [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100124696
GTEX Portal (Tissue expression)TEC
Protein : pattern, domain, 3D structure
UniProt/SwissProtP42680   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP42680  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP42680
Splice isoforms : SwissVarP42680
PhosPhoSitePlusP42680
Domaine pattern : Prosite (Expaxy)PH_DOMAIN (PS50003)    PROTEIN_KINASE_ATP (PS00107)    PROTEIN_KINASE_DOM (PS50011)    PROTEIN_KINASE_TYR (PS00109)    SH2 (PS50001)    SH3 (PS50002)    ZF_BTK (PS51113)   
Domains : Interpro (EBI)Kinase-like_dom    PH_dom-like    PH_domain    Prot_kinase_dom    Protein_kinase_ATP_BS    Ser-Thr/Tyr_kinase_cat_dom    SH2    SH3_domain    Tyr_kinase_AS    Tyr_kinase_cat_dom    Znf_Btk_motif   
Domain families : Pfam (Sanger)BTK (PF00779)    PH (PF00169)    Pkinase_Tyr (PF07714)    SH2 (PF00017)    SH3_1 (PF00018)   
Domain families : Pfam (NCBI)pfam00779    pfam00169    pfam07714    pfam00017    pfam00018   
Domain families : Smart (EMBL)BTK (SM00107)  PH (SM00233)  SH2 (SM00252)  SH3 (SM00326)  TyrKc (SM00219)  
Conserved Domain (NCBI)TEC
DMDM Disease mutations100124696
Blocks (Seattle)TEC
PDB (SRS)2LUL   
PDB (PDBSum)2LUL   
PDB (IMB)2LUL   
PDB (RSDB)2LUL   
Structural Biology KnowledgeBase2LUL   
SCOP (Structural Classification of Proteins)2LUL   
CATH (Classification of proteins structures)2LUL   
SuperfamilyP42680
Peptide AtlasP42680
Protein Interaction databases
DIP (DOE-UCLA)P42680
IntAct (EBI)P42680
BioGRIDTEC
STRING (EMBL)TEC
ZODIACTEC
Ontologies - Pathways
QuickGOP42680
Ontology : AmiGO
Ontology : EGO-EBI
Pathways : KEGGOsteoclast differentiation    T cell receptor signaling pathway   
NDEx NetworkTEC
Atlas of Cancer Signalling NetworkTEC
Wikipedia pathwaysTEC
Orthology - Evolution
OrthoDB100124696
Phylogenetic Trees/Animal Genes : TreeFam-
HOVERGENP42680
HOGENOMP42680
Homologs : HomoloGeneTEC
Homology/Alignments : Family Browser (UCSC)TEC
Gene fusions - Rearrangements
Fusion : MitelmanTEC/NCAM2 [-/21q21.1]  
Fusion: TCGATEC - NCAM2 21q21.1 LUAD
Fusion: TCGATEC - PASD1 Xq28 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTEC [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TEC
dbVarTEC
ClinVarTEC
1000_GenomesTEC 
Exome Variant ServerTEC
ExAC (Exome Aggregation Consortium)TEC (select the gene name)
Genetic variants : HAPMAP100124696
Genomic Variants (DGV)TEC [DGVbeta]
DECIPHERTEC [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTEC 
Mutations
ICGC Data Portal- 
TCGA Data Portal- 
Broad Tumor Portal-
OASIS Portal- [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTEC  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMD-
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TEC
DgiDB (Drug Gene Interaction Database)TEC
DoCM (Curated mutations)TEC (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TEC (select a term)
intoGenTEC
Cancer3DTEC(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTEC
Genetic Testing Registry TEC
NextProtP42680 [Medical]
TSGene100124696
GENETestsTEC
Target ValidationTEC
Huge Navigator - [HugePedia]
snp3D : Map Gene to Disease100124696
BioCentury BCIQTEC
ClinGenTEC
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100124696
Clinical trialTEC
Miscellaneous
canSAR (ICR)TEC (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTEC
EVEXTEC
GoPubMedTEC
iHOPTEC
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:34:40 CEST 2017

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