Atlas of Genetics and Cytogenetics in Oncology and Haematology


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TECPR1 (tectonin beta-propeller repeat containing 1)

Identity

Alias_symbol (synonym)DKFZP434B0335
FLJ23419
FLJ90593
KIAA1358
Other alias-
HGNC (Hugo) TECPR1
LocusID (NCBI) 25851
Atlas_Id 56512
Location 7q21.3  [Link to chromosome band 7q21]
Location_base_pair Starts at 97844755 and ends at 97881563 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TECPR1   22214
Cards
Entrez_Gene (NCBI)TECPR1  25851  tectonin beta-propeller repeat containing 1
Aliases
GeneCards (Weizmann)TECPR1
Ensembl hg19 (Hinxton)ENSG00000205356 [Gene_View]  chr7:97844755-97881563 [Contig_View]  TECPR1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000205356 [Gene_View]  chr7:97844755-97881563 [Contig_View]  TECPR1 [Vega]
ICGC DataPortalENSG00000205356
TCGA cBioPortalTECPR1
AceView (NCBI)TECPR1
Genatlas (Paris)TECPR1
WikiGenes25851
SOURCE (Princeton)TECPR1
Genetics Home Reference (NIH)TECPR1
Genomic and cartography
GoldenPath hg19 (UCSC)TECPR1  -     chr7:97844755-97881563 -  7q21.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TECPR1  -     7q21.3   [Description]    (hg38-Dec_2013)
EnsemblTECPR1 - 7q21.3 [CytoView hg19]  TECPR1 - 7q21.3 [CytoView hg38]
Mapping of homologs : NCBITECPR1 [Mapview hg19]  TECPR1 [Mapview hg38]
OMIM614781   
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_015395
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TECPR1
Cluster EST : UnigeneHs.592281 [ NCBI ]
CGAP (NCI)Hs.592281
Alternative Splicing GalleryENSG00000205356
Gene ExpressionTECPR1 [ NCBI-GEO ]   TECPR1 [ EBI - ARRAY_EXPRESS ]   TECPR1 [ SEEK ]   TECPR1 [ MEM ]
Gene Expression Viewer (FireBrowse)TECPR1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)25851
GTEX Portal (Tissue expression)TECPR1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7Z6L1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7Z6L1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7Z6L1
Splice isoforms : SwissVarQ7Z6L1
PhosPhoSitePlusQ7Z6L1
Domains : Interpro (EBI)Beta-propeller_rpt_TECPR    Peroxin    Peroxin/Ferlin    PH_dom-like   
Domain families : Pfam (Sanger)Hyd_WA (PF06462)    Pex24p (PF06398)   
Domain families : Pfam (NCBI)pfam06462    pfam06398   
Domain families : Smart (EMBL)DysFC (SM00694)  DysFN (SM00693)  TECPR (SM00706)  
Conserved Domain (NCBI)TECPR1
DMDM Disease mutations25851
Blocks (Seattle)TECPR1
PDB (SRS)4TQ1   
PDB (PDBSum)4TQ1   
PDB (IMB)4TQ1   
PDB (RSDB)4TQ1   
Structural Biology KnowledgeBase4TQ1   
SCOP (Structural Classification of Proteins)4TQ1   
CATH (Classification of proteins structures)4TQ1   
SuperfamilyQ7Z6L1
Human Protein AtlasENSG00000205356
Peptide AtlasQ7Z6L1
HPRD08521
IPIIPI00162199   IPI00893793   IPI01015180   IPI00952913   IPI00926353   IPI00927403   IPI00926765   
Protein Interaction databases
DIP (DOE-UCLA)Q7Z6L1
IntAct (EBI)Q7Z6L1
FunCoupENSG00000205356
BioGRIDTECPR1
STRING (EMBL)TECPR1
ZODIACTECPR1
Ontologies - Pathways
QuickGOQ7Z6L1
Ontology : AmiGOautophagosome membrane  protein binding  lysosomal membrane  autophagy  integral component of membrane  cytoplasmic vesicle  phosphatidylinositol-3-phosphate binding  autophagosome maturation  
Ontology : EGO-EBIautophagosome membrane  protein binding  lysosomal membrane  autophagy  integral component of membrane  cytoplasmic vesicle  phosphatidylinositol-3-phosphate binding  autophagosome maturation  
NDEx NetworkTECPR1
Atlas of Cancer Signalling NetworkTECPR1
Wikipedia pathwaysTECPR1
Orthology - Evolution
OrthoDB25851
GeneTree (enSembl)ENSG00000205356
Phylogenetic Trees/Animal Genes : TreeFamTECPR1
HOVERGENQ7Z6L1
HOGENOMQ7Z6L1
Homologs : HomoloGeneTECPR1
Homology/Alignments : Family Browser (UCSC)TECPR1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTECPR1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TECPR1
dbVarTECPR1
ClinVarTECPR1
1000_GenomesTECPR1 
Exome Variant ServerTECPR1
ExAC (Exome Aggregation Consortium)TECPR1 (select the gene name)
Genetic variants : HAPMAP25851
Genomic Variants (DGV)TECPR1 [DGVbeta]
DECIPHER (Syndromes)7:97844755-97881563  ENSG00000205356
CONAN: Copy Number AnalysisTECPR1 
Mutations
ICGC Data PortalTECPR1 
TCGA Data PortalTECPR1 
Broad Tumor PortalTECPR1
OASIS PortalTECPR1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTECPR1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTECPR1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TECPR1
DgiDB (Drug Gene Interaction Database)TECPR1
DoCM (Curated mutations)TECPR1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TECPR1 (select a term)
intoGenTECPR1
Cancer3DTECPR1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614781   
Orphanet
MedgenTECPR1
Genetic Testing Registry TECPR1
NextProtQ7Z6L1 [Medical]
TSGene25851
GENETestsTECPR1
Huge Navigator TECPR1 [HugePedia]
snp3D : Map Gene to Disease25851
BioCentury BCIQTECPR1
ClinGenTECPR1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD25851
Chemical/Pharm GKB GenePA164726436
Clinical trialTECPR1
Miscellaneous
canSAR (ICR)TECPR1 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTECPR1
EVEXTECPR1
GoPubMedTECPR1
iHOPTECPR1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:30:45 CET 2017

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