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TECPR2 (tectonin beta-propeller repeat containing 2)

Identity

Alias_namesKIAA0329
KIAA0329
Other aliasSPG49
HGNC (Hugo) TECPR2
LocusID (NCBI) 9895
Atlas_Id 74610
Location 14q32.31  [Link to chromosome band 14q32]
Location_base_pair Starts at 102362912 and ends at 102465671 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
DGKG (3q27.2) / TECPR2 (14q32.31)RCOR1 (14q32.31) / TECPR2 (14q32.31)UBE2E3 (2q31.3) / TECPR2 (14q32.31)
RCOR1 TECPR2UBE2E3 TECPR2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TECPR2   19957
Cards
Entrez_Gene (NCBI)TECPR2  9895  tectonin beta-propeller repeat containing 2
AliasesKIAA0329; SPG49
GeneCards (Weizmann)TECPR2
Ensembl hg19 (Hinxton)ENSG00000196663 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000196663 [Gene_View]  chr14:102362912-102465671 [Contig_View]  TECPR2 [Vega]
ICGC DataPortalENSG00000196663
TCGA cBioPortalTECPR2
AceView (NCBI)TECPR2
Genatlas (Paris)TECPR2
WikiGenes9895
SOURCE (Princeton)TECPR2
Genetics Home Reference (NIH)TECPR2
Genomic and cartography
GoldenPath hg38 (UCSC)TECPR2  -     chr14:102362912-102465671 +  14q32.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TECPR2  -     14q32.31   [Description]    (hg19-Feb_2009)
EnsemblTECPR2 - 14q32.31 [CytoView hg19]  TECPR2 - 14q32.31 [CytoView hg38]
Mapping of homologs : NCBITECPR2 [Mapview hg19]  TECPR2 [Mapview hg38]
OMIM615000   615031   
Gene and transcription
Genbank (Entrez)AB002295 AB002327 AK127721 AK296395 AK299690
RefSeq transcript (Entrez)NM_001172631 NM_014844
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TECPR2
Cluster EST : UnigeneHs.195667 [ NCBI ]
CGAP (NCI)Hs.195667
Alternative Splicing GalleryENSG00000196663
Gene ExpressionTECPR2 [ NCBI-GEO ]   TECPR2 [ EBI - ARRAY_EXPRESS ]   TECPR2 [ SEEK ]   TECPR2 [ MEM ]
Gene Expression Viewer (FireBrowse)TECPR2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9895
GTEX Portal (Tissue expression)TECPR2
Protein : pattern, domain, 3D structure
UniProt/SwissProtO15040   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO15040  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO15040
Splice isoforms : SwissVarO15040
PhosPhoSitePlusO15040
Domains : Interpro (EBI)Beta-propeller_rpt_TECPR    RCC1/BLIP-II    TECPR2    WD40/YVTN_repeat-like_dom    WD40_repeat    WD40_repeat_dom   
Domain families : Pfam (Sanger)Hyd_WA (PF06462)   
Domain families : Pfam (NCBI)pfam06462   
Domain families : Smart (EMBL)TECPR (SM00706)  WD40 (SM00320)  
Conserved Domain (NCBI)TECPR2
DMDM Disease mutations9895
Blocks (Seattle)TECPR2
SuperfamilyO15040
Human Protein AtlasENSG00000196663
Peptide AtlasO15040
HPRD17184
IPIIPI00415054   IPI00444144   
Protein Interaction databases
DIP (DOE-UCLA)O15040
IntAct (EBI)O15040
FunCoupENSG00000196663
BioGRIDTECPR2
STRING (EMBL)TECPR2
ZODIACTECPR2
Ontologies - Pathways
QuickGOO15040
Ontology : AmiGOprotein binding  autophagy  
Ontology : EGO-EBIprotein binding  autophagy  
NDEx NetworkTECPR2
Atlas of Cancer Signalling NetworkTECPR2
Wikipedia pathwaysTECPR2
Orthology - Evolution
OrthoDB9895
GeneTree (enSembl)ENSG00000196663
Phylogenetic Trees/Animal Genes : TreeFamTECPR2
HOVERGENO15040
HOGENOMO15040
Homologs : HomoloGeneTECPR2
Homology/Alignments : Family Browser (UCSC)TECPR2
Gene fusions - Rearrangements
Fusion: TCGARCOR1 TECPR2
Fusion: TCGAUBE2E3 TECPR2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTECPR2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TECPR2
dbVarTECPR2
ClinVarTECPR2
1000_GenomesTECPR2 
Exome Variant ServerTECPR2
ExAC (Exome Aggregation Consortium)TECPR2 (select the gene name)
Genetic variants : HAPMAP9895
Genomic Variants (DGV)TECPR2 [DGVbeta]
DECIPHERTECPR2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTECPR2 
Mutations
ICGC Data PortalTECPR2 
TCGA Data PortalTECPR2 
Broad Tumor PortalTECPR2
OASIS PortalTECPR2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTECPR2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTECPR2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TECPR2
DgiDB (Drug Gene Interaction Database)TECPR2
DoCM (Curated mutations)TECPR2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TECPR2 (select a term)
intoGenTECPR2
Cancer3DTECPR2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615000    615031   
Orphanet21718   
MedgenTECPR2
Genetic Testing Registry TECPR2
NextProtO15040 [Medical]
TSGene9895
GENETestsTECPR2
Target ValidationTECPR2
Huge Navigator TECPR2 [HugePedia]
snp3D : Map Gene to Disease9895
BioCentury BCIQTECPR2
ClinGenTECPR2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9895
Chemical/Pharm GKB GenePA164726437
Clinical trialTECPR2
Miscellaneous
canSAR (ICR)TECPR2 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTECPR2
EVEXTECPR2
GoPubMedTECPR2
iHOPTECPR2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:41:12 CEST 2017

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