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TECR (trans-2,3-enoyl-CoA reductase)

Identity

Alias (NCBI)GPSN2
MRT14
SC2
TER
HGNC (Hugo) TECR
HGNC Alias symbTER
MRT14
HGNC Alias namevery-long-chain enoyl-CoA reductase
HGNC Previous nameSC2
 GPSN2
HGNC Previous nameglycoprotein, synaptic 2
LocusID (NCBI) 9524
Atlas_Id 54061
Location 19p13.12  [Link to chromosome band 19p13]
Location_base_pair Starts at 14529594 and ends at 14565980 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
OSBPL5 (11p15.4) / TECR (19p13.12)STRN4 (19q13.32) / TECR (19p13.12)TECR (19p13.12) / PKN1 (19p13.12)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TECR   4551
Cards
Entrez_Gene (NCBI)TECR    trans-2,3-enoyl-CoA reductase
AliasesGPSN2; MRT14; SC2; TER
GeneCards (Weizmann)TECR
Ensembl hg19 (Hinxton)ENSG00000099797 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000099797 [Gene_View]  ENSG00000099797 [Sequence]  chr19:14529594-14565980 [Contig_View]  TECR [Vega]
ICGC DataPortalENSG00000099797
TCGA cBioPortalTECR
AceView (NCBI)TECR
Genatlas (Paris)TECR
SOURCE (Princeton)TECR
Genetics Home Reference (NIH)TECR
Genomic and cartography
GoldenPath hg38 (UCSC)TECR  -     chr19:14529594-14565980 +  19p13.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TECR  -     19p13.12   [Description]    (hg19-Feb_2009)
GoldenPathTECR - 19p13.12 [CytoView hg19]  TECR - 19p13.12 [CytoView hg38]
ImmunoBaseENSG00000099797
Genome Data Viewer NCBITECR [Mapview hg19]  
OMIM610057   614020   
Gene and transcription
Genbank (Entrez)AF038958 AF038959 AF222742 AK001416 AK094087
RefSeq transcript (Entrez)NM_001321170 NM_004868 NM_138501
Consensus coding sequences : CCDS (NCBI)TECR
Gene ExpressionTECR [ NCBI-GEO ]   TECR [ EBI - ARRAY_EXPRESS ]   TECR [ SEEK ]   TECR [ MEM ]
Gene Expression Viewer (FireBrowse)TECR [ Firebrowse - Broad ]
GenevisibleExpression of TECR in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9524
GTEX Portal (Tissue expression)TECR
Human Protein AtlasENSG00000099797-TECR [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NZ01   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NZ01  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NZ01
PhosPhoSitePlusQ9NZ01
Domaine pattern : Prosite (Expaxy)S5A_REDUCTASE (PS50244)   
Domains : Interpro (EBI)3-oxo-5_a-steroid_4-DH_C    SRD5A/TECR    Ubiquitin-like_domsf   
Domain families : Pfam (Sanger)Steroid_dh (PF02544)   
Domain families : Pfam (NCBI)pfam02544   
Conserved Domain (NCBI)TECR
PDB (RSDB)2DZJ   
PDB Europe2DZJ   
PDB (PDBSum)2DZJ   
PDB (IMB)2DZJ   
Structural Biology KnowledgeBase2DZJ   
SCOP (Structural Classification of Proteins)2DZJ   
CATH (Classification of proteins structures)2DZJ   
SuperfamilyQ9NZ01
AlphaFold pdb e-kbQ9NZ01   
Human Protein Atlas [tissue]ENSG00000099797-TECR [tissue]
HPRD17076
Protein Interaction databases
DIP (DOE-UCLA)Q9NZ01
IntAct (EBI)Q9NZ01
BioGRIDTECR
STRING (EMBL)TECR
ZODIACTECR
Ontologies - Pathways
QuickGOQ9NZ01
Ontology : AmiGOprotein binding  nucleus  endoplasmic reticulum  endoplasmic reticulum membrane  sphingolipid metabolic process  sphingolipid metabolic process  oxidoreductase activity  very-long-chain-acyl-CoA dehydrogenase activity  integral component of endoplasmic reticulum membrane  fatty acid elongation  long-chain fatty-acyl-CoA biosynthetic process  very long-chain fatty acid biosynthetic process  very long-chain fatty acid biosynthetic process  very long-chain fatty acid biosynthetic process  very-long-chain enoyl-CoA reductase activity  
Ontology : EGO-EBIprotein binding  nucleus  endoplasmic reticulum  endoplasmic reticulum membrane  sphingolipid metabolic process  sphingolipid metabolic process  oxidoreductase activity  very-long-chain-acyl-CoA dehydrogenase activity  integral component of endoplasmic reticulum membrane  fatty acid elongation  long-chain fatty-acyl-CoA biosynthetic process  very long-chain fatty acid biosynthetic process  very long-chain fatty acid biosynthetic process  very long-chain fatty acid biosynthetic process  very-long-chain enoyl-CoA reductase activity  
Pathways : KEGGFatty acid elongation    Biosynthesis of unsaturated fatty acids   
NDEx NetworkTECR
Atlas of Cancer Signalling NetworkTECR
Wikipedia pathwaysTECR
Orthology - Evolution
OrthoDB9524
GeneTree (enSembl)ENSG00000099797
Phylogenetic Trees/Animal Genes : TreeFamTECR
Homologs : HomoloGeneTECR
Homology/Alignments : Family Browser (UCSC)TECR
Gene fusions - Rearrangements
Fusion : MitelmanSTRN4/TECR [19q13.32/19p13.12]  
Fusion : QuiverTECR
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTECR [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TECR
dbVarTECR
ClinVarTECR
MonarchTECR
1000_GenomesTECR 
Exome Variant ServerTECR
GNOMAD BrowserENSG00000099797
Varsome BrowserTECR
ACMGTECR variants
VarityQ9NZ01
Genomic Variants (DGV)TECR [DGVbeta]
DECIPHERTECR [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTECR 
Mutations
ICGC Data PortalTECR 
TCGA Data PortalTECR 
Broad Tumor PortalTECR
OASIS PortalTECR [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTECR  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTECR
Mutations and Diseases : HGMDTECR
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTECR
DgiDB (Drug Gene Interaction Database)TECR
DoCM (Curated mutations)TECR
CIViC (Clinical Interpretations of Variants in Cancer)TECR
Cancer3DTECR
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610057    614020   
Orphanet11804   
DisGeNETTECR
MedgenTECR
Genetic Testing Registry TECR
NextProtQ9NZ01 [Medical]
GENETestsTECR
Target ValidationTECR
Huge Navigator TECR [HugePedia]
ClinGenTECR
Clinical trials, drugs, therapy
MyCancerGenomeTECR
Protein Interactions : CTDTECR
Pharm GKB GenePA28946
PharosQ9NZ01
Clinical trialTECR
Miscellaneous
canSAR (ICR)TECR
HarmonizomeTECR
DataMed IndexTECR
Probes
Litterature
PubMed84 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTECR
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 15:34:43 CEST 2021

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