Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TECRL (trans-2,3-enoyl-CoA reductase like)

Identity

Alias_symbol (synonym)GPSN2L
SRD5A2L2
DKFZp313D0829
DKFZp313B2333
TERL
Other aliasCPVT3
HGNC (Hugo) TECRL
LocusID (NCBI) 253017
Atlas_Id 74611
Location 4q13.1  [Link to chromosome band 4q13]
Location_base_pair Starts at 64278459 and ends at 64409460 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
TECRL (4q13.1) / TSNARE1 (8q24.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TECRL   27365
Cards
Entrez_Gene (NCBI)TECRL  253017  trans-2,3-enoyl-CoA reductase like
AliasesCPVT3; GPSN2L; SRD5A2L2; TERL
GeneCards (Weizmann)TECRL
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr4:64278459-64409460 [Contig_View]  TECRL [Vega]
TCGA cBioPortalTECRL
AceView (NCBI)TECRL
Genatlas (Paris)TECRL
WikiGenes253017
SOURCE (Princeton)TECRL
Genetics Home Reference (NIH)TECRL
Genomic and cartography
GoldenPath hg38 (UCSC)TECRL  -     chr4:64278459-64409460 -  4q13.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TECRL  -     4q13.1   [Description]    (hg19-Feb_2009)
EnsemblTECRL - 4q13.1 [CytoView hg19]  TECRL - 4q13.1 [CytoView hg38]
Mapping of homologs : NCBITECRL [Mapview hg19]  TECRL [Mapview hg38]
OMIM614021   617242   
Gene and transcription
Genbank (Entrez)AK290606 AL833108 BC072463 BX647590
RefSeq transcript (Entrez)NM_001010874
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TECRL
Cluster EST : UnigeneHs.227752 [ NCBI ]
CGAP (NCI)Hs.227752
Gene ExpressionTECRL [ NCBI-GEO ]   TECRL [ EBI - ARRAY_EXPRESS ]   TECRL [ SEEK ]   TECRL [ MEM ]
Gene Expression Viewer (FireBrowse)TECRL [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)253017
GTEX Portal (Tissue expression)TECRL
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5HYJ1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5HYJ1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5HYJ1
Splice isoforms : SwissVarQ5HYJ1
Catalytic activity : Enzyme1.3.1.- [ Enzyme-Expasy ]   1.3.1.-1.3.1.- [ IntEnz-EBI ]   1.3.1.- [ BRENDA ]   1.3.1.- [ KEGG ]   
PhosPhoSitePlusQ5HYJ1
Domaine pattern : Prosite (Expaxy)S5A_REDUCTASE (PS50244)   
Domains : Interpro (EBI)3-oxo-5_a-steroid_4-DH_C   
Domain families : Pfam (Sanger)Steroid_dh (PF02544)   
Domain families : Pfam (NCBI)pfam02544   
Conserved Domain (NCBI)TECRL
DMDM Disease mutations253017
Blocks (Seattle)TECRL
SuperfamilyQ5HYJ1
Peptide AtlasQ5HYJ1
HPRD18104
IPIIPI00160479   IPI00968021   IPI00966304   IPI00966625   
Protein Interaction databases
DIP (DOE-UCLA)Q5HYJ1
IntAct (EBI)Q5HYJ1
BioGRIDTECRL
STRING (EMBL)TECRL
ZODIACTECRL
Ontologies - Pathways
QuickGOQ5HYJ1
Ontology : AmiGOendoplasmic reticulum  integral component of membrane  oxidoreductase activity  oxidoreductase activity, acting on the CH-CH group of donors  very long-chain fatty acid biosynthetic process  oxidation-reduction process  
Ontology : EGO-EBIendoplasmic reticulum  integral component of membrane  oxidoreductase activity  oxidoreductase activity, acting on the CH-CH group of donors  very long-chain fatty acid biosynthetic process  oxidation-reduction process  
NDEx NetworkTECRL
Atlas of Cancer Signalling NetworkTECRL
Wikipedia pathwaysTECRL
Orthology - Evolution
OrthoDB253017
Phylogenetic Trees/Animal Genes : TreeFamTECRL
HOVERGENQ5HYJ1
HOGENOMQ5HYJ1
Homologs : HomoloGeneTECRL
Homology/Alignments : Family Browser (UCSC)TECRL
Gene fusions - Rearrangements
Fusion: Tumor Portal TECRL
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTECRL [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TECRL
dbVarTECRL
ClinVarTECRL
1000_GenomesTECRL 
Exome Variant ServerTECRL
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP253017
Genomic Variants (DGV)TECRL [DGVbeta]
DECIPHERTECRL [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTECRL 
Mutations
ICGC Data PortalTECRL 
TCGA Data PortalTECRL 
Broad Tumor PortalTECRL
OASIS PortalTECRL [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTECRL  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTECRL
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TECRL
DgiDB (Drug Gene Interaction Database)TECRL
DoCM (Curated mutations)TECRL (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TECRL (select a term)
intoGenTECRL
Cancer3DTECRL(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614021    617242   
Orphanet
MedgenTECRL
Genetic Testing Registry TECRL
NextProtQ5HYJ1 [Medical]
TSGene253017
GENETestsTECRL
Target ValidationTECRL
Huge Navigator TECRL [HugePedia]
snp3D : Map Gene to Disease253017
BioCentury BCIQTECRL
ClinGenTECRL
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD253017
Chemical/Pharm GKB GenePA165664664
Clinical trialTECRL
Miscellaneous
canSAR (ICR)TECRL (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTECRL
EVEXTECRL
GoPubMedTECRL
iHOPTECRL
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 12:32:03 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.