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TECTB (tectorin beta)

Identity

Other alias-
HGNC (Hugo) TECTB
LocusID (NCBI) 6975
Atlas_Id 53185
Location 10q25.2  [Link to chromosome band 10q25]
Location_base_pair Starts at 114043414 and ends at 114064792 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TECTB   11721
Cards
Entrez_Gene (NCBI)TECTB  6975  tectorin beta
Aliases
GeneCards (Weizmann)TECTB
Ensembl hg19 (Hinxton)ENSG00000119913 [Gene_View]  chr10:114043414-114064792 [Contig_View]  TECTB [Vega]
Ensembl hg38 (Hinxton)ENSG00000119913 [Gene_View]  chr10:114043414-114064792 [Contig_View]  TECTB [Vega]
ICGC DataPortalENSG00000119913
TCGA cBioPortalTECTB
AceView (NCBI)TECTB
Genatlas (Paris)TECTB
WikiGenes6975
SOURCE (Princeton)TECTB
Genetics Home Reference (NIH)TECTB
Genomic and cartography
GoldenPath hg19 (UCSC)TECTB  -     chr10:114043414-114064792 +  10q25.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TECTB  -     10q25.2   [Description]    (hg38-Dec_2013)
EnsemblTECTB - 10q25.2 [CytoView hg19]  TECTB - 10q25.2 [CytoView hg38]
Mapping of homologs : NCBITECTB [Mapview hg19]  TECTB [Mapview hg38]
OMIM602653   
Gene and transcription
Genbank (Entrez)AF312827 AW021518 BC113497 BC113499 HQ258194
RefSeq transcript (Entrez)NM_058222
RefSeq genomic (Entrez)NC_000010 NC_018921 NT_030059 NW_004929376
Consensus coding sequences : CCDS (NCBI)TECTB
Cluster EST : UnigeneHs.348615 [ NCBI ]
CGAP (NCI)Hs.348615
Alternative Splicing GalleryENSG00000119913
Gene ExpressionTECTB [ NCBI-GEO ]   TECTB [ EBI - ARRAY_EXPRESS ]   TECTB [ SEEK ]   TECTB [ MEM ]
Gene Expression Viewer (FireBrowse)TECTB [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6975
GTEX Portal (Tissue expression)TECTB
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96PL2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96PL2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96PL2
Splice isoforms : SwissVarQ96PL2
PhosPhoSitePlusQ96PL2
Domaine pattern : Prosite (Expaxy)ZP_1 (PS00682)    ZP_2 (PS51034)   
Domains : Interpro (EBI)ZP_dom    ZP_dom_CS   
Domain families : Pfam (Sanger)Zona_pellucida (PF00100)   
Domain families : Pfam (NCBI)pfam00100   
Domain families : Smart (EMBL)ZP (SM00241)  
Conserved Domain (NCBI)TECTB
DMDM Disease mutations6975
Blocks (Seattle)TECTB
SuperfamilyQ96PL2
Human Protein AtlasENSG00000119913
Peptide AtlasQ96PL2
HPRD16005
IPIIPI00044552   
Protein Interaction databases
DIP (DOE-UCLA)Q96PL2
IntAct (EBI)Q96PL2
FunCoupENSG00000119913
BioGRIDTECTB
STRING (EMBL)TECTB
ZODIACTECTB
Ontologies - Pathways
QuickGOQ96PL2
Ontology : AmiGOextracellular matrix structural constituent  proteinaceous extracellular matrix  plasma membrane  anchored component of membrane  
Ontology : EGO-EBIextracellular matrix structural constituent  proteinaceous extracellular matrix  plasma membrane  anchored component of membrane  
NDEx NetworkTECTB
Atlas of Cancer Signalling NetworkTECTB
Wikipedia pathwaysTECTB
Orthology - Evolution
OrthoDB6975
GeneTree (enSembl)ENSG00000119913
Phylogenetic Trees/Animal Genes : TreeFamTECTB
HOVERGENQ96PL2
HOGENOMQ96PL2
Homologs : HomoloGeneTECTB
Homology/Alignments : Family Browser (UCSC)TECTB
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTECTB [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TECTB
dbVarTECTB
ClinVarTECTB
1000_GenomesTECTB 
Exome Variant ServerTECTB
ExAC (Exome Aggregation Consortium)TECTB (select the gene name)
Genetic variants : HAPMAP6975
Genomic Variants (DGV)TECTB [DGVbeta]
DECIPHER (Syndromes)10:114043414-114064792  ENSG00000119913
CONAN: Copy Number AnalysisTECTB 
Mutations
ICGC Data PortalTECTB 
TCGA Data PortalTECTB 
Broad Tumor PortalTECTB
OASIS PortalTECTB [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTECTB  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTECTB
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TECTB
DgiDB (Drug Gene Interaction Database)TECTB
DoCM (Curated mutations)TECTB (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TECTB (select a term)
intoGenTECTB
Cancer3DTECTB(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602653   
Orphanet
MedgenTECTB
Genetic Testing Registry TECTB
NextProtQ96PL2 [Medical]
TSGene6975
GENETestsTECTB
Huge Navigator TECTB [HugePedia]
snp3D : Map Gene to Disease6975
BioCentury BCIQTECTB
ClinGenTECTB
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6975
Chemical/Pharm GKB GenePA36438
Clinical trialTECTB
Miscellaneous
canSAR (ICR)TECTB (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTECTB
EVEXTECTB
GoPubMedTECTB
iHOPTECTB
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:22:10 CEST 2017

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