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TEDC1 (tubulin epsilon and delta complex 1)

Identity

Alias_namesC14orf80
chromosome 14 open reading frame 80
Other alias
HGNC (Hugo) TEDC1
LocusID (NCBI) 283643
Atlas_Id 79893
Location 14q32.33  [Link to chromosome band 14q32]
Location_base_pair Starts at 105491249 and ends at 105499248 bp from pter ( according to hg38-Dec_2013)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)TEDC1   20127
Cards
Entrez_Gene (NCBI)TEDC1  283643  tubulin epsilon and delta complex 1
AliasesC14orf80
GeneCards (Weizmann)TEDC1
Ensembl hg19 (Hinxton)ENSG00000185347 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000185347 [Gene_View]  chr14:105491249-105499248 [Contig_View]  TEDC1 [Vega]
ICGC DataPortalENSG00000185347
TCGA cBioPortalTEDC1
AceView (NCBI)TEDC1
Genatlas (Paris)TEDC1
WikiGenes283643
SOURCE (Princeton)TEDC1
Genetics Home Reference (NIH)TEDC1
Genomic and cartography
GoldenPath hg38 (UCSC)TEDC1  -     chr14:105491249-105499248 +  14q32.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TEDC1  -     14q32.33   [Description]    (hg19-Feb_2009)
EnsemblTEDC1 - 14q32.33 [CytoView hg19]  TEDC1 - 14q32.33 [CytoView hg38]
Mapping of homologs : NCBITEDC1 [Mapview hg19]  TEDC1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK024506 AW236560 BC016028 BX161477 BX248038
RefSeq transcript (Entrez)NM_001134875 NM_001134876 NM_001134877 NM_001198983 NM_173608
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TEDC1
Cluster EST : UnigeneHs.720306 [ NCBI ]
CGAP (NCI)Hs.720306
Alternative Splicing GalleryENSG00000185347
Gene ExpressionTEDC1 [ NCBI-GEO ]   TEDC1 [ EBI - ARRAY_EXPRESS ]   TEDC1 [ SEEK ]   TEDC1 [ MEM ]
Gene Expression Viewer (FireBrowse)TEDC1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)283643
GTEX Portal (Tissue expression)TEDC1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86SX3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86SX3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86SX3
Splice isoforms : SwissVarQ86SX3
PhosPhoSitePlusQ86SX3
Domains : Interpro (EBI)DUF4509    DUF4510   
Domain families : Pfam (Sanger)DUF4509 (PF14970)    DUF4510 (PF14971)   
Domain families : Pfam (NCBI)pfam14970    pfam14971   
Conserved Domain (NCBI)TEDC1
DMDM Disease mutations283643
Blocks (Seattle)TEDC1
SuperfamilyQ86SX3
Human Protein AtlasENSG00000185347
Peptide AtlasQ86SX3
IPIIPI00742988   IPI00384142   IPI00384141   IPI01021027   IPI00059738   IPI00791279   IPI01018159   IPI00927519   IPI00926280   IPI00926987   IPI00926755   IPI00925464   
Protein Interaction databases
DIP (DOE-UCLA)Q86SX3
IntAct (EBI)Q86SX3
FunCoupENSG00000185347
BioGRIDTEDC1
STRING (EMBL)TEDC1
ZODIACTEDC1
Ontologies - Pathways
QuickGOQ86SX3
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkTEDC1
Atlas of Cancer Signalling NetworkTEDC1
Wikipedia pathwaysTEDC1
Orthology - Evolution
OrthoDB283643
GeneTree (enSembl)ENSG00000185347
Phylogenetic Trees/Animal Genes : TreeFamTEDC1
HOVERGENQ86SX3
HOGENOMQ86SX3
Homologs : HomoloGeneTEDC1
Homology/Alignments : Family Browser (UCSC)TEDC1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTEDC1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TEDC1
dbVarTEDC1
ClinVarTEDC1
1000_GenomesTEDC1 
Exome Variant ServerTEDC1
ExAC (Exome Aggregation Consortium)TEDC1 (select the gene name)
Genetic variants : HAPMAP283643
Genomic Variants (DGV)TEDC1 [DGVbeta]
DECIPHERTEDC1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTEDC1 
Mutations
ICGC Data PortalTEDC1 
TCGA Data PortalTEDC1 
Broad Tumor PortalTEDC1
OASIS PortalTEDC1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDTEDC1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TEDC1
DgiDB (Drug Gene Interaction Database)TEDC1
DoCM (Curated mutations)TEDC1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TEDC1 (select a term)
intoGenTEDC1
Cancer3DTEDC1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTEDC1
Genetic Testing Registry TEDC1
NextProtQ86SX3 [Medical]
TSGene283643
GENETestsTEDC1
Target ValidationTEDC1
Huge Navigator TEDC1 [HugePedia]
snp3D : Map Gene to Disease283643
BioCentury BCIQTEDC1
ClinGenTEDC1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD283643
Chemical/Pharm GKB GenePA134885988
Clinical trialTEDC1
Miscellaneous
canSAR (ICR)TEDC1 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTEDC1
EVEXTEDC1
GoPubMedTEDC1
iHOPTEDC1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:41:13 CEST 2017

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