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TEDC2 (tubulin epsilon and delta complex 2)

Identity

Alias_namesC16orf59
chromosome 16 open reading frame 59
Alias_symbol (synonym)FLJ13909
Other alias
HGNC (Hugo) TEDC2
LocusID (NCBI) 80178
Atlas_Id 80149
Location 16p13.3  [Link to chromosome band 16p13]
Location_base_pair Starts at 2460114 and ends at 2464963 bp from pter ( according to hg38-Dec_2013)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)TEDC2   25849
Cards
Entrez_Gene (NCBI)TEDC2  80178  tubulin epsilon and delta complex 2
AliasesC16orf59
GeneCards (Weizmann)TEDC2
Ensembl hg19 (Hinxton)ENSG00000162062 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000162062 [Gene_View]  chr16:2460114-2464963 [Contig_View]  TEDC2 [Vega]
ICGC DataPortalENSG00000162062
TCGA cBioPortalTEDC2
AceView (NCBI)TEDC2
Genatlas (Paris)TEDC2
WikiGenes80178
SOURCE (Princeton)TEDC2
Genetics Home Reference (NIH)TEDC2
Genomic and cartography
GoldenPath hg38 (UCSC)TEDC2  -     chr16:2460114-2464963 +  16p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TEDC2  -     16p13.3   [Description]    (hg19-Feb_2009)
EnsemblTEDC2 - 16p13.3 [CytoView hg19]  TEDC2 - 16p13.3 [CytoView hg38]
Mapping of homologs : NCBITEDC2 [Mapview hg19]  TEDC2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK023971 AK093788 AK128408 AK301929 AL559561
RefSeq transcript (Entrez)NM_025108
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TEDC2
Cluster EST : UnigeneHs.534491 [ NCBI ]
CGAP (NCI)Hs.534491
Alternative Splicing GalleryENSG00000162062
Gene ExpressionTEDC2 [ NCBI-GEO ]   TEDC2 [ EBI - ARRAY_EXPRESS ]   TEDC2 [ SEEK ]   TEDC2 [ MEM ]
Gene Expression Viewer (FireBrowse)TEDC2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)80178
GTEX Portal (Tissue expression)TEDC2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7L2K0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7L2K0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7L2K0
Splice isoforms : SwissVarQ7L2K0
PhosPhoSitePlusQ7L2K0
Domains : Interpro (EBI)DUF4693   
Domain families : Pfam (Sanger)DUF4693 (PF15764)   
Domain families : Pfam (NCBI)pfam15764   
Conserved Domain (NCBI)TEDC2
DMDM Disease mutations80178
Blocks (Seattle)TEDC2
SuperfamilyQ7L2K0
Human Protein AtlasENSG00000162062
Peptide AtlasQ7L2K0
IPIIPI00646232   IPI00018122   IPI00386738   IPI00639991   
Protein Interaction databases
DIP (DOE-UCLA)Q7L2K0
IntAct (EBI)Q7L2K0
FunCoupENSG00000162062
BioGRIDTEDC2
STRING (EMBL)TEDC2
ZODIACTEDC2
Ontologies - Pathways
QuickGOQ7L2K0
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkTEDC2
Atlas of Cancer Signalling NetworkTEDC2
Wikipedia pathwaysTEDC2
Orthology - Evolution
OrthoDB80178
GeneTree (enSembl)ENSG00000162062
Phylogenetic Trees/Animal Genes : TreeFamTEDC2
HOVERGENQ7L2K0
HOGENOMQ7L2K0
Homologs : HomoloGeneTEDC2
Homology/Alignments : Family Browser (UCSC)TEDC2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTEDC2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TEDC2
dbVarTEDC2
ClinVarTEDC2
1000_GenomesTEDC2 
Exome Variant ServerTEDC2
ExAC (Exome Aggregation Consortium)TEDC2 (select the gene name)
Genetic variants : HAPMAP80178
Genomic Variants (DGV)TEDC2 [DGVbeta]
DECIPHERTEDC2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTEDC2 
Mutations
ICGC Data PortalTEDC2 
TCGA Data PortalTEDC2 
Broad Tumor PortalTEDC2
OASIS PortalTEDC2 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDTEDC2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TEDC2
DgiDB (Drug Gene Interaction Database)TEDC2
DoCM (Curated mutations)TEDC2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TEDC2 (select a term)
intoGenTEDC2
Cancer3DTEDC2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTEDC2
Genetic Testing Registry TEDC2
NextProtQ7L2K0 [Medical]
TSGene80178
GENETestsTEDC2
Target ValidationTEDC2
Huge Navigator TEDC2 [HugePedia]
snp3D : Map Gene to Disease80178
BioCentury BCIQTEDC2
ClinGenTEDC2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD80178
Chemical/Pharm GKB GenePA143485396
Clinical trialTEDC2
Miscellaneous
canSAR (ICR)TEDC2 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTEDC2
EVEXTEDC2
GoPubMedTEDC2
iHOPTEDC2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:41:13 CEST 2017

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