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TEDDM1 (transmembrane epididymal protein 1)

Identity

Alias_symbol (synonym)HE9
Epdd1
TMEM45C
EDDM9
Other alias
HGNC (Hugo) TEDDM1
LocusID (NCBI) 127670
Atlas_Id 74612
Location 1q25.3  [Link to chromosome band 1q25]
Location_base_pair Starts at 182367252 and ends at 182369751 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TEDDM1   30233
Cards
Entrez_Gene (NCBI)TEDDM1  127670  transmembrane epididymal protein 1
AliasesEDDM9; Epdd1; HE9; TMEM45C
GeneCards (Weizmann)TEDDM1
Ensembl hg19 (Hinxton)ENSG00000203730 [Gene_View]  chr1:182367252-182369751 [Contig_View]  TEDDM1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000203730 [Gene_View]  chr1:182367252-182369751 [Contig_View]  TEDDM1 [Vega]
ICGC DataPortalENSG00000203730
TCGA cBioPortalTEDDM1
AceView (NCBI)TEDDM1
Genatlas (Paris)TEDDM1
WikiGenes127670
SOURCE (Princeton)TEDDM1
Genetics Home Reference (NIH)TEDDM1
Genomic and cartography
GoldenPath hg19 (UCSC)TEDDM1  -     chr1:182367252-182369751 -  1q25.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TEDDM1  -     1q25.3   [Description]    (hg38-Dec_2013)
EnsemblTEDDM1 - 1q25.3 [CytoView hg19]  TEDDM1 - 1q25.3 [CytoView hg38]
Mapping of homologs : NCBITEDDM1 [Mapview hg19]  TEDDM1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AJ515384
RefSeq transcript (Entrez)NM_172000
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_004487 NW_004929293
Consensus coding sequences : CCDS (NCBI)TEDDM1
Cluster EST : UnigeneHs.156977 [ NCBI ]
CGAP (NCI)Hs.156977
Alternative Splicing GalleryENSG00000203730
Gene ExpressionTEDDM1 [ NCBI-GEO ]   TEDDM1 [ EBI - ARRAY_EXPRESS ]   TEDDM1 [ SEEK ]   TEDDM1 [ MEM ]
Gene Expression Viewer (FireBrowse)TEDDM1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)127670
GTEX Portal (Tissue expression)TEDDM1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5T9Z0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5T9Z0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5T9Z0
Splice isoforms : SwissVarQ5T9Z0
PhosPhoSitePlusQ5T9Z0
Domains : Interpro (EBI)DUF716_TMEM45   
Domain families : Pfam (Sanger)DUF716 (PF04819)   
Domain families : Pfam (NCBI)pfam04819   
Conserved Domain (NCBI)TEDDM1
DMDM Disease mutations127670
Blocks (Seattle)TEDDM1
SuperfamilyQ5T9Z0
Human Protein AtlasENSG00000203730
Peptide AtlasQ5T9Z0
HPRD13642
IPIIPI00217031   
Protein Interaction databases
DIP (DOE-UCLA)Q5T9Z0
IntAct (EBI)Q5T9Z0
FunCoupENSG00000203730
BioGRIDTEDDM1
STRING (EMBL)TEDDM1
ZODIACTEDDM1
Ontologies - Pathways
QuickGOQ5T9Z0
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkTEDDM1
Atlas of Cancer Signalling NetworkTEDDM1
Wikipedia pathwaysTEDDM1
Orthology - Evolution
OrthoDB127670
GeneTree (enSembl)ENSG00000203730
Phylogenetic Trees/Animal Genes : TreeFamTEDDM1
HOVERGENQ5T9Z0
HOGENOMQ5T9Z0
Homologs : HomoloGeneTEDDM1
Homology/Alignments : Family Browser (UCSC)TEDDM1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTEDDM1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TEDDM1
dbVarTEDDM1
ClinVarTEDDM1
1000_GenomesTEDDM1 
Exome Variant ServerTEDDM1
ExAC (Exome Aggregation Consortium)TEDDM1 (select the gene name)
Genetic variants : HAPMAP127670
Genomic Variants (DGV)TEDDM1 [DGVbeta]
DECIPHER (Syndromes)1:182367252-182369751  ENSG00000203730
CONAN: Copy Number AnalysisTEDDM1 
Mutations
ICGC Data PortalTEDDM1 
TCGA Data PortalTEDDM1 
Broad Tumor PortalTEDDM1
OASIS PortalTEDDM1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTEDDM1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTEDDM1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TEDDM1
DgiDB (Drug Gene Interaction Database)TEDDM1
DoCM (Curated mutations)TEDDM1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TEDDM1 (select a term)
intoGenTEDDM1
Cancer3DTEDDM1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTEDDM1
Genetic Testing Registry TEDDM1
NextProtQ5T9Z0 [Medical]
TSGene127670
GENETestsTEDDM1
Huge Navigator TEDDM1 [HugePedia]
snp3D : Map Gene to Disease127670
BioCentury BCIQTEDDM1
ClinGenTEDDM1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD127670
Chemical/Pharm GKB GenePA142670818
Clinical trialTEDDM1
Miscellaneous
canSAR (ICR)TEDDM1 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineTEDDM1
EVEXTEDDM1
GoPubMedTEDDM1
iHOPTEDDM1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:47:47 CET 2017

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