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TEF (TEF transcription factor, PAR bZIP family member)

Identity

Alias (NCBI)-
HGNC (Hugo) TEF
HGNC Alias symbKIAA1655
HGNC Alias namethyrotroph embryonic factor
HGNC Previous namethyrotrophic embryonic factor
 TEF, PAR bZIP transcription factor
LocusID (NCBI) 7008
Atlas_Id 42516
Location 22q13.2  [Link to chromosome band 22q13]
Location_base_pair Starts at 41381942 and ends at 41399326 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ACO2 (22q13.2) / TEF (22q13.2)TEF (22q13.2) / CRYAB (11q23.1)TEF (22q13.2) / KIF26B (1q44)
TEF (22q13.2) / TEF (22q13.2)ACO2 22q13.2 / TEF 22q13.2TEF 22q13.2 / KIF26B 1q44

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TEF   11722
Cards
Entrez_Gene (NCBI)TEF    TEF transcription factor, PAR bZIP family member
Aliases
GeneCards (Weizmann)TEF
Ensembl hg19 (Hinxton)ENSG00000167074 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000167074 [Gene_View]  ENSG00000167074 [Sequence]  chr22:41381942-41399326 [Contig_View]  TEF [Vega]
ICGC DataPortalENSG00000167074
TCGA cBioPortalTEF
AceView (NCBI)TEF
Genatlas (Paris)TEF
SOURCE (Princeton)TEF
Genetics Home Reference (NIH)TEF
Genomic and cartography
GoldenPath hg38 (UCSC)TEF  -     chr22:41381942-41399326 +  22q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TEF  -     22q13.2   [Description]    (hg19-Feb_2009)
GoldenPathTEF - 22q13.2 [CytoView hg19]  TEF - 22q13.2 [CytoView hg38]
ImmunoBaseENSG00000167074
Genome Data Viewer NCBITEF [Mapview hg19]  
OMIM188595   
Gene and transcription
Genbank (Entrez)AB051442 AK091916 AK295595 AK314906 AL122101
RefSeq transcript (Entrez)NM_001145398 NM_003216
Consensus coding sequences : CCDS (NCBI)TEF
Gene ExpressionTEF [ NCBI-GEO ]   TEF [ EBI - ARRAY_EXPRESS ]   TEF [ SEEK ]   TEF [ MEM ]
Gene Expression Viewer (FireBrowse)TEF [ Firebrowse - Broad ]
GenevisibleExpression of TEF in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7008
GTEX Portal (Tissue expression)TEF
Human Protein AtlasENSG00000167074-TEF [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ10587   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ10587  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ10587
PhosPhoSitePlusQ10587
Domaine pattern : Prosite (Expaxy)BZIP (PS50217)   
Domains : Interpro (EBI)bZIP    PAR_bZIP    TEF/VBP   
Domain families : Pfam (Sanger)bZIP_2 (PF07716)   
Domain families : Pfam (NCBI)pfam07716   
Domain families : Smart (EMBL)BRLZ (SM00338)  
Conserved Domain (NCBI)TEF
PDB (RSDB)4U5T   
PDB Europe4U5T   
PDB (PDBSum)4U5T   
PDB (IMB)4U5T   
Structural Biology KnowledgeBase4U5T   
SCOP (Structural Classification of Proteins)4U5T   
CATH (Classification of proteins structures)4U5T   
SuperfamilyQ10587
AlphaFold pdb e-kbQ10587   
Human Protein Atlas [tissue]ENSG00000167074-TEF [tissue]
HPRD01783
Protein Interaction databases
DIP (DOE-UCLA)Q10587
IntAct (EBI)Q10587
BioGRIDTEF
STRING (EMBL)TEF
ZODIACTEF
Ontologies - Pathways
QuickGOQ10587
Ontology : AmiGOchromatin  RNA polymerase II cis-regulatory region sequence-specific DNA binding  DNA-binding transcription factor activity, RNA polymerase II-specific  DNA-binding transcription factor activity, RNA polymerase II-specific  protein binding  nucleus  regulation of transcription by RNA polymerase II  positive regulation of transcription by RNA polymerase II  rhythmic process  sequence-specific double-stranded DNA binding  
Ontology : EGO-EBIchromatin  RNA polymerase II cis-regulatory region sequence-specific DNA binding  DNA-binding transcription factor activity, RNA polymerase II-specific  DNA-binding transcription factor activity, RNA polymerase II-specific  protein binding  nucleus  regulation of transcription by RNA polymerase II  positive regulation of transcription by RNA polymerase II  rhythmic process  sequence-specific double-stranded DNA binding  
NDEx NetworkTEF
Atlas of Cancer Signalling NetworkTEF
Wikipedia pathwaysTEF
Orthology - Evolution
OrthoDB7008
GeneTree (enSembl)ENSG00000167074
Phylogenetic Trees/Animal Genes : TreeFamTEF
Homologs : HomoloGeneTEF
Homology/Alignments : Family Browser (UCSC)TEF
Gene fusions - Rearrangements
Fusion : MitelmanACO2/TEF [22q13.2/22q13.2]  
Fusion : MitelmanTEF/KIF26B [22q13.2/1q44]  
Fusion : QuiverTEF
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTEF [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TEF
dbVarTEF
ClinVarTEF
MonarchTEF
1000_GenomesTEF 
Exome Variant ServerTEF
GNOMAD BrowserENSG00000167074
Varsome BrowserTEF
ACMGTEF variants
VarityQ10587
Genomic Variants (DGV)TEF [DGVbeta]
DECIPHERTEF [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTEF 
Mutations
ICGC Data PortalTEF 
TCGA Data PortalTEF 
Broad Tumor PortalTEF
OASIS PortalTEF [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTEF  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTEF
Mutations and Diseases : HGMDTEF
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTEF
DgiDB (Drug Gene Interaction Database)TEF
DoCM (Curated mutations)TEF
CIViC (Clinical Interpretations of Variants in Cancer)TEF
Cancer3DTEF
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM188595   
Orphanet
DisGeNETTEF
MedgenTEF
Genetic Testing Registry TEF
NextProtQ10587 [Medical]
GENETestsTEF
Target ValidationTEF
Huge Navigator TEF [HugePedia]
ClinGenTEF
Clinical trials, drugs, therapy
MyCancerGenomeTEF
Protein Interactions : CTDTEF
Pharm GKB GenePA36439
PharosQ10587
Clinical trialTEF
Miscellaneous
canSAR (ICR)TEF
HarmonizomeTEF
DataMed IndexTEF
Probes
Litterature
PubMed30 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTEF
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:34:44 CEST 2021

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