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TEF (TEF, PAR bZIP transcription factor)

Identity

Alias_namesthyrotrophic embryonic factor
Alias_symbol (synonym)KIAA1655
Other alias-
HGNC (Hugo) TEF
LocusID (NCBI) 7008
Atlas_Id 42516
Location 22q13.2  [Link to chromosome band 22q13]
Location_base_pair Starts at 41367333 and ends at 41399328 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ACO2 (22q13.2) / TEF (22q13.2)TEF (22q13.2) / CRYAB (11q23.1)TEF (22q13.2) / KIF26B (1q44)
TEF (22q13.2) / TEF (22q13.2)ACO2 22q13.2 / TEF 22q13.2TEF 22q13.2 / KIF26B 1q44

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TEF   11722
Cards
Entrez_Gene (NCBI)TEF  7008  TEF, PAR bZIP transcription factor
Aliases
GeneCards (Weizmann)TEF
Ensembl hg19 (Hinxton)ENSG00000167074 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000167074 [Gene_View]  chr22:41367333-41399328 [Contig_View]  TEF [Vega]
ICGC DataPortalENSG00000167074
TCGA cBioPortalTEF
AceView (NCBI)TEF
Genatlas (Paris)TEF
WikiGenes7008
SOURCE (Princeton)TEF
Genetics Home Reference (NIH)TEF
Genomic and cartography
GoldenPath hg38 (UCSC)TEF  -     chr22:41367333-41399328 +  22q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TEF  -     22q13.2   [Description]    (hg19-Feb_2009)
EnsemblTEF - 22q13.2 [CytoView hg19]  TEF - 22q13.2 [CytoView hg38]
Mapping of homologs : NCBITEF [Mapview hg19]  TEF [Mapview hg38]
OMIM188595   
Gene and transcription
Genbank (Entrez)AB051442 AK091916 AK295595 AK314906 AL122101
RefSeq transcript (Entrez)NM_001145398 NM_003216
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TEF
Cluster EST : UnigeneHs.181159 [ NCBI ]
CGAP (NCI)Hs.181159
Alternative Splicing GalleryENSG00000167074
Gene ExpressionTEF [ NCBI-GEO ]   TEF [ EBI - ARRAY_EXPRESS ]   TEF [ SEEK ]   TEF [ MEM ]
Gene Expression Viewer (FireBrowse)TEF [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7008
GTEX Portal (Tissue expression)TEF
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ10587   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ10587  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ10587
Splice isoforms : SwissVarQ10587
PhosPhoSitePlusQ10587
Domaine pattern : Prosite (Expaxy)BZIP (PS50217)   
Domains : Interpro (EBI)bZIP    TEF/VBP   
Domain families : Pfam (Sanger)bZIP_2 (PF07716)   
Domain families : Pfam (NCBI)pfam07716   
Domain families : Smart (EMBL)BRLZ (SM00338)  
Conserved Domain (NCBI)TEF
DMDM Disease mutations7008
Blocks (Seattle)TEF
SuperfamilyQ10587
Human Protein AtlasENSG00000167074
Peptide AtlasQ10587
HPRD01783
IPIIPI00879207   IPI00216670   IPI00878698   
Protein Interaction databases
DIP (DOE-UCLA)Q10587
IntAct (EBI)Q10587
FunCoupENSG00000167074
BioGRIDTEF
STRING (EMBL)TEF
ZODIACTEF
Ontologies - Pathways
QuickGOQ10587
Ontology : AmiGORNA polymerase II regulatory region sequence-specific DNA binding  transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding  protein binding  nucleus  regulation of transcription from RNA polymerase II promoter  transcription from RNA polymerase II promoter  multicellular organism development  positive regulation of transcription from RNA polymerase II promoter  rhythmic process  
Ontology : EGO-EBIRNA polymerase II regulatory region sequence-specific DNA binding  transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding  protein binding  nucleus  regulation of transcription from RNA polymerase II promoter  transcription from RNA polymerase II promoter  multicellular organism development  positive regulation of transcription from RNA polymerase II promoter  rhythmic process  
NDEx NetworkTEF
Atlas of Cancer Signalling NetworkTEF
Wikipedia pathwaysTEF
Orthology - Evolution
OrthoDB7008
GeneTree (enSembl)ENSG00000167074
Phylogenetic Trees/Animal Genes : TreeFamTEF
HOVERGENQ10587
HOGENOMQ10587
Homologs : HomoloGeneTEF
Homology/Alignments : Family Browser (UCSC)TEF
Gene fusions - Rearrangements
Fusion : MitelmanACO2/TEF [22q13.2/22q13.2]  [t(22;22)(q13;q13)]  
Fusion : MitelmanTEF/KIF26B [22q13.2/1q44]  [t(1;22)(q44;q13)]  
Fusion: TCGAACO2 22q13.2 TEF 22q13.2 BRCA
Fusion: TCGATEF 22q13.2 KIF26B 1q44 HNSC
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTEF [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TEF
dbVarTEF
ClinVarTEF
1000_GenomesTEF 
Exome Variant ServerTEF
ExAC (Exome Aggregation Consortium)TEF (select the gene name)
Genetic variants : HAPMAP7008
Genomic Variants (DGV)TEF [DGVbeta]
DECIPHERTEF [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTEF 
Mutations
ICGC Data PortalTEF 
TCGA Data PortalTEF 
Broad Tumor PortalTEF
OASIS PortalTEF [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTEF  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTEF
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TEF
DgiDB (Drug Gene Interaction Database)TEF
DoCM (Curated mutations)TEF (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TEF (select a term)
intoGenTEF
Cancer3DTEF(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM188595   
Orphanet
MedgenTEF
Genetic Testing Registry TEF
NextProtQ10587 [Medical]
TSGene7008
GENETestsTEF
Huge Navigator TEF [HugePedia]
snp3D : Map Gene to Disease7008
BioCentury BCIQTEF
ClinGenTEF
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD7008
Chemical/Pharm GKB GenePA36439
Clinical trialTEF
Miscellaneous
canSAR (ICR)TEF (select the gene name)
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTEF
EVEXTEF
GoPubMedTEF
iHOPTEF
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:40:41 CEST 2017

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