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TEFM (transcription elongation factor, mitochondrial)

Identity

Alias_namesC17orf42
chromosome 17 open reading frame 42
Alias_symbol (synonym)FLJ22729
Other alias
HGNC (Hugo) TEFM
LocusID (NCBI) 79736
Atlas_Id 74613
Location 17q11.2  [Link to chromosome band 17q11]
Location_base_pair Starts at 30898983 and ends at 30906268 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
TEFM (17q11.2) / CADM2 (3p12.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TEFM   26223
Cards
Entrez_Gene (NCBI)TEFM  79736  transcription elongation factor, mitochondrial
AliasesC17orf42
GeneCards (Weizmann)TEFM
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr17:30898983-30906268 [Contig_View]  TEFM [Vega]
TCGA cBioPortalTEFM
AceView (NCBI)TEFM
Genatlas (Paris)TEFM
WikiGenes79736
SOURCE (Princeton)TEFM
Genetics Home Reference (NIH)TEFM
Genomic and cartography
GoldenPath hg38 (UCSC)TEFM  -     chr17:30898983-30906268 -  17q11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TEFM  -     17q11.2   [Description]    (hg19-Feb_2009)
EnsemblTEFM - 17q11.2 [CytoView hg19]  TEFM - 17q11.2 [CytoView hg38]
Mapping of homologs : NCBITEFM [Mapview hg19]  TEFM [Mapview hg38]
OMIM616422   
Gene and transcription
Genbank (Entrez)AF086465 AJ314645 AK026382 AK225474 AK298495
RefSeq transcript (Entrez)NM_024683
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TEFM
Cluster EST : UnigeneHs.317340 [ NCBI ]
CGAP (NCI)Hs.317340
Gene ExpressionTEFM [ NCBI-GEO ]   TEFM [ EBI - ARRAY_EXPRESS ]   TEFM [ SEEK ]   TEFM [ MEM ]
Gene Expression Viewer (FireBrowse)TEFM [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79736
GTEX Portal (Tissue expression)TEFM
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96QE5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96QE5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96QE5
Splice isoforms : SwissVarQ96QE5
PhosPhoSitePlusQ96QE5
Domains : Interpro (EBI)RNaseH-like_dom    RuvA_2-like    Tex_RuvX-like_dom   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TEFM
DMDM Disease mutations79736
Blocks (Seattle)TEFM
SuperfamilyQ96QE5
Peptide AtlasQ96QE5
HPRD08005
IPIIPI00170503   IPI00910480   
Protein Interaction databases
DIP (DOE-UCLA)Q96QE5
IntAct (EBI)Q96QE5
BioGRIDTEFM
STRING (EMBL)TEFM
ZODIACTEFM
Ontologies - Pathways
QuickGOQ96QE5
Ontology : AmiGORNA binding  protein binding  mitochondrion  mitochondrial matrix  oxidative phosphorylation  mitochondrial DNA replication  regulation of transcription, DNA-templated  transcription from mitochondrial promoter  crossover junction endodeoxyribonuclease activity  DNA polymerase processivity factor activity  intracellular ribonucleoprotein complex  mitochondrial nucleoid  
Ontology : EGO-EBIRNA binding  protein binding  mitochondrion  mitochondrial matrix  oxidative phosphorylation  mitochondrial DNA replication  regulation of transcription, DNA-templated  transcription from mitochondrial promoter  crossover junction endodeoxyribonuclease activity  DNA polymerase processivity factor activity  intracellular ribonucleoprotein complex  mitochondrial nucleoid  
NDEx NetworkTEFM
Atlas of Cancer Signalling NetworkTEFM
Wikipedia pathwaysTEFM
Orthology - Evolution
OrthoDB79736
Phylogenetic Trees/Animal Genes : TreeFamTEFM
HOVERGENQ96QE5
HOGENOMQ96QE5
Homologs : HomoloGeneTEFM
Homology/Alignments : Family Browser (UCSC)TEFM
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTEFM [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TEFM
dbVarTEFM
ClinVarTEFM
1000_GenomesTEFM 
Exome Variant ServerTEFM
ExAC (Exome Aggregation Consortium)TEFM (select the gene name)
Genetic variants : HAPMAP79736
Genomic Variants (DGV)TEFM [DGVbeta]
DECIPHERTEFM [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTEFM 
Mutations
ICGC Data PortalTEFM 
TCGA Data PortalTEFM 
Broad Tumor PortalTEFM
OASIS PortalTEFM [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDTEFM
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TEFM
DgiDB (Drug Gene Interaction Database)TEFM
DoCM (Curated mutations)TEFM (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TEFM (select a term)
intoGenTEFM
Cancer3DTEFM(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616422   
Orphanet
MedgenTEFM
Genetic Testing Registry TEFM
NextProtQ96QE5 [Medical]
TSGene79736
GENETestsTEFM
Target ValidationTEFM
Huge Navigator TEFM [HugePedia]
snp3D : Map Gene to Disease79736
BioCentury BCIQTEFM
ClinGenTEFM
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79736
Chemical/Pharm GKB GenePA142672226
Clinical trialTEFM
Miscellaneous
canSAR (ICR)TEFM (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTEFM
EVEXTEFM
GoPubMedTEFM
iHOPTEFM
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:41:13 CEST 2017

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