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TEFM (transcription elongation factor, mitochondrial)

Identity

Alias (NCBI)C17orf42
HGNC (Hugo) TEFM
HGNC Alias symbFLJ22729
HGNC Previous nameC17orf42
HGNC Previous namechromosome 17 open reading frame 42
LocusID (NCBI) 79736
Atlas_Id 74613
Location 17q11.2  [Link to chromosome band 17q11]
Location_base_pair Starts at 30898986 and ends at 30906238 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
TEFM (17q11.2) / CADM2 (3p12.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TEFM   26223
Cards
Entrez_Gene (NCBI)TEFM    transcription elongation factor, mitochondrial
AliasesC17orf42
GeneCards (Weizmann)TEFM
Ensembl hg19 (Hinxton)ENSG00000172171 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000172171 [Gene_View]  ENSG00000172171 [Sequence]  chr17:30898986-30906238 [Contig_View]  TEFM [Vega]
ICGC DataPortalENSG00000172171
TCGA cBioPortalTEFM
AceView (NCBI)TEFM
Genatlas (Paris)TEFM
SOURCE (Princeton)TEFM
Genetics Home Reference (NIH)TEFM
Genomic and cartography
GoldenPath hg38 (UCSC)TEFM  -     chr17:30898986-30906238 -  17q11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TEFM  -     17q11.2   [Description]    (hg19-Feb_2009)
GoldenPathTEFM - 17q11.2 [CytoView hg19]  TEFM - 17q11.2 [CytoView hg38]
ImmunoBaseENSG00000172171
Genome Data Viewer NCBITEFM [Mapview hg19]  
OMIM616422   
Gene and transcription
Genbank (Entrez)AF086465 AJ314645 AK026382 AK225474 AK298495
RefSeq transcript (Entrez)NM_024683
Consensus coding sequences : CCDS (NCBI)TEFM
Gene ExpressionTEFM [ NCBI-GEO ]   TEFM [ EBI - ARRAY_EXPRESS ]   TEFM [ SEEK ]   TEFM [ MEM ]
Gene Expression Viewer (FireBrowse)TEFM [ Firebrowse - Broad ]
GenevisibleExpression of TEFM in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79736
GTEX Portal (Tissue expression)TEFM
Human Protein AtlasENSG00000172171-TEFM [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96QE5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96QE5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96QE5
PhosPhoSitePlusQ96QE5
Domains : Interpro (EBI)RNaseH-like_sf    RuvA_2-like    TEFM   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TEFM
PDB (RSDB)5OL8    5OL9    5OLA   
PDB Europe5OL8    5OL9    5OLA   
PDB (PDBSum)5OL8    5OL9    5OLA   
PDB (IMB)5OL8    5OL9    5OLA   
Structural Biology KnowledgeBase5OL8    5OL9    5OLA   
SCOP (Structural Classification of Proteins)5OL8    5OL9    5OLA   
CATH (Classification of proteins structures)5OL8    5OL9    5OLA   
SuperfamilyQ96QE5
AlphaFold pdb e-kbQ96QE5   
Human Protein Atlas [tissue]ENSG00000172171-TEFM [tissue]
HPRD08005
Protein Interaction databases
DIP (DOE-UCLA)Q96QE5
IntAct (EBI)Q96QE5
BioGRIDTEFM
STRING (EMBL)TEFM
ZODIACTEFM
Ontologies - Pathways
QuickGOQ96QE5
Ontology : AmiGORNA binding  protein binding  mitochondrion  mitochondrial matrix  oxidative phosphorylation  DNA metabolic process  mitochondrial DNA replication  mitochondrial transcription  transcription elongation from mitochondrial promoter  crossover junction endodeoxyribonuclease activity  DNA polymerase processivity factor activity  mitochondrial nucleoid  ribonucleoprotein complex  
Ontology : EGO-EBIRNA binding  protein binding  mitochondrion  mitochondrial matrix  oxidative phosphorylation  DNA metabolic process  mitochondrial DNA replication  mitochondrial transcription  transcription elongation from mitochondrial promoter  crossover junction endodeoxyribonuclease activity  DNA polymerase processivity factor activity  mitochondrial nucleoid  ribonucleoprotein complex  
NDEx NetworkTEFM
Atlas of Cancer Signalling NetworkTEFM
Wikipedia pathwaysTEFM
Orthology - Evolution
OrthoDB79736
GeneTree (enSembl)ENSG00000172171
Phylogenetic Trees/Animal Genes : TreeFamTEFM
Homologs : HomoloGeneTEFM
Homology/Alignments : Family Browser (UCSC)TEFM
Gene fusions - Rearrangements
Fusion : QuiverTEFM
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTEFM [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TEFM
dbVarTEFM
ClinVarTEFM
MonarchTEFM
1000_GenomesTEFM 
Exome Variant ServerTEFM
GNOMAD BrowserENSG00000172171
Varsome BrowserTEFM
ACMGTEFM variants
VarityQ96QE5
Genomic Variants (DGV)TEFM [DGVbeta]
DECIPHERTEFM [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTEFM 
Mutations
ICGC Data PortalTEFM 
TCGA Data PortalTEFM 
Broad Tumor PortalTEFM
OASIS PortalTEFM [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTEFM  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTEFM
Mutations and Diseases : HGMDTEFM
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTEFM
DgiDB (Drug Gene Interaction Database)TEFM
DoCM (Curated mutations)TEFM
CIViC (Clinical Interpretations of Variants in Cancer)TEFM
Cancer3DTEFM
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616422   
Orphanet
DisGeNETTEFM
MedgenTEFM
Genetic Testing Registry TEFM
NextProtQ96QE5 [Medical]
GENETestsTEFM
Target ValidationTEFM
Huge Navigator TEFM [HugePedia]
ClinGenTEFM
Clinical trials, drugs, therapy
MyCancerGenomeTEFM
Protein Interactions : CTDTEFM
Pharm GKB GenePA142672226
PharosQ96QE5
Clinical trialTEFM
Miscellaneous
canSAR (ICR)TEFM
HarmonizomeTEFM
DataMed IndexTEFM
Probes
Litterature
PubMed29 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTEFM
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:25:10 CEST 2021

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