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TEKT1 (tektin 1)

Identity

Other alias-
HGNC (Hugo) TEKT1
LocusID (NCBI) 83659
Atlas_Id 74614
Location 17p13.1  [Link to chromosome band 17p13]
Location_base_pair Starts at 6799981 and ends at 6831741 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CXCL16 (17p13.2) / TEKT1 (17p13.1)TMEM41B (11p15.4) / TEKT1 (17p13.1)TOP3A (17p11.2) / TEKT1 (17p13.1)
TOP3A TEKT1CXCL16 TEKT1TMEM41B TEKT1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TEKT1   15534
Cards
Entrez_Gene (NCBI)TEKT1  83659  tektin 1
Aliases
GeneCards (Weizmann)TEKT1
Ensembl hg19 (Hinxton)ENSG00000167858 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000167858 [Gene_View]  chr17:6799981-6831741 [Contig_View]  TEKT1 [Vega]
ICGC DataPortalENSG00000167858
TCGA cBioPortalTEKT1
AceView (NCBI)TEKT1
Genatlas (Paris)TEKT1
WikiGenes83659
SOURCE (Princeton)TEKT1
Genetics Home Reference (NIH)TEKT1
Genomic and cartography
GoldenPath hg38 (UCSC)TEKT1  -     chr17:6799981-6831741 -  17p13.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TEKT1  -     17p13.1   [Description]    (hg19-Feb_2009)
EnsemblTEKT1 - 17p13.1 [CytoView hg19]  TEKT1 - 17p13.1 [CytoView hg38]
Mapping of homologs : NCBITEKT1 [Mapview hg19]  TEKT1 [Mapview hg38]
OMIM609002   
Gene and transcription
Genbank (Entrez)AF357879 AK094836 AK292818 AK304345 BC014599
RefSeq transcript (Entrez)NM_053285
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TEKT1
Cluster EST : UnigeneHs.462108 [ NCBI ]
CGAP (NCI)Hs.462108
Alternative Splicing GalleryENSG00000167858
Gene ExpressionTEKT1 [ NCBI-GEO ]   TEKT1 [ EBI - ARRAY_EXPRESS ]   TEKT1 [ SEEK ]   TEKT1 [ MEM ]
Gene Expression Viewer (FireBrowse)TEKT1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)83659
GTEX Portal (Tissue expression)TEKT1
Human Protein AtlasENSG00000167858-TEKT1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ969V4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ969V4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ969V4
Splice isoforms : SwissVarQ969V4
PhosPhoSitePlusQ969V4
Domains : Interpro (EBI)Tektin   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TEKT1
DMDM Disease mutations83659
Blocks (Seattle)TEKT1
SuperfamilyQ969V4
Human Protein Atlas [tissue]ENSG00000167858-TEKT1 [tissue]
Peptide AtlasQ969V4
HPRD10611
IPIIPI00056511   IPI01012719   
Protein Interaction databases
DIP (DOE-UCLA)Q969V4
IntAct (EBI)Q969V4
FunCoupENSG00000167858
BioGRIDTEKT1
STRING (EMBL)TEKT1
ZODIACTEKT1
Ontologies - Pathways
QuickGOQ969V4
Ontology : AmiGOprotein binding  nucleus  cytoplasm  microtubule  flagellated sperm motility  sperm flagellum  cilium assembly  cilium movement involved in cell motility  
Ontology : EGO-EBIprotein binding  nucleus  cytoplasm  microtubule  flagellated sperm motility  sperm flagellum  cilium assembly  cilium movement involved in cell motility  
NDEx NetworkTEKT1
Atlas of Cancer Signalling NetworkTEKT1
Wikipedia pathwaysTEKT1
Orthology - Evolution
OrthoDB83659
GeneTree (enSembl)ENSG00000167858
Phylogenetic Trees/Animal Genes : TreeFamTEKT1
HOVERGENQ969V4
HOGENOMQ969V4
Homologs : HomoloGeneTEKT1
Homology/Alignments : Family Browser (UCSC)TEKT1
Gene fusions - Rearrangements
Fusion: TCGA_MDACCTOP3A TEKT1
Fusion: TCGA_MDACCCXCL16 TEKT1
Fusion: TCGA_MDACCTMEM41B TEKT1
Tumor Fusion PortalTEKT1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTEKT1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TEKT1
dbVarTEKT1
ClinVarTEKT1
1000_GenomesTEKT1 
Exome Variant ServerTEKT1
ExAC (Exome Aggregation Consortium)ENSG00000167858
GNOMAD BrowserENSG00000167858
Genetic variants : HAPMAP83659
Genomic Variants (DGV)TEKT1 [DGVbeta]
DECIPHERTEKT1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTEKT1 
Mutations
ICGC Data PortalTEKT1 
TCGA Data PortalTEKT1 
Broad Tumor PortalTEKT1
OASIS PortalTEKT1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTEKT1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTEKT1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TEKT1
DgiDB (Drug Gene Interaction Database)TEKT1
DoCM (Curated mutations)TEKT1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TEKT1 (select a term)
intoGenTEKT1
Cancer3DTEKT1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609002   
Orphanet
DisGeNETTEKT1
MedgenTEKT1
Genetic Testing Registry TEKT1
NextProtQ969V4 [Medical]
TSGene83659
GENETestsTEKT1
Target ValidationTEKT1
Huge Navigator TEKT1 [HugePedia]
snp3D : Map Gene to Disease83659
BioCentury BCIQTEKT1
ClinGenTEKT1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD83659
Chemical/Pharm GKB GenePA37976
Clinical trialTEKT1
Miscellaneous
canSAR (ICR)TEKT1 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTEKT1
EVEXTEKT1
GoPubMedTEKT1
iHOPTEKT1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:37:04 CET 2017

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