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TEKT1 (tektin 1)

Identity

Alias (NCBI)-
HGNC (Hugo) TEKT1
LocusID (NCBI) 83659
Atlas_Id 74614
Location 17p13.1  [Link to chromosome band 17p13]
Location_base_pair Starts at 6797994 and ends at 6831729 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CXCL16 (17p13.2) / TEKT1 (17p13.1)TMEM41B (11p15.4) / TEKT1 (17p13.1)TOP3A (17p11.2) / TEKT1 (17p13.1)
TOP3A TEKT1CXCL16 TEKT1TMEM41B TEKT1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TEKT1   15534
Cards
Entrez_Gene (NCBI)TEKT1    tektin 1
Aliases
GeneCards (Weizmann)TEKT1
Ensembl hg19 (Hinxton)ENSG00000167858 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000167858 [Gene_View]  ENSG00000167858 [Sequence]  chr17:6797994-6831729 [Contig_View]  TEKT1 [Vega]
ICGC DataPortalENSG00000167858
TCGA cBioPortalTEKT1
AceView (NCBI)TEKT1
Genatlas (Paris)TEKT1
SOURCE (Princeton)TEKT1
Genetics Home Reference (NIH)TEKT1
Genomic and cartography
GoldenPath hg38 (UCSC)TEKT1  -     chr17:6797994-6831729 -  17p13.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TEKT1  -     17p13.1   [Description]    (hg19-Feb_2009)
GoldenPathTEKT1 - 17p13.1 [CytoView hg19]  TEKT1 - 17p13.1 [CytoView hg38]
ImmunoBaseENSG00000167858
Genome Data Viewer NCBITEKT1 [Mapview hg19]  
OMIM609002   
Gene and transcription
Genbank (Entrez)AF357879 AK094836 AK292818 AK304345 BC014599
RefSeq transcript (Entrez)NM_053285
Consensus coding sequences : CCDS (NCBI)TEKT1
Gene ExpressionTEKT1 [ NCBI-GEO ]   TEKT1 [ EBI - ARRAY_EXPRESS ]   TEKT1 [ SEEK ]   TEKT1 [ MEM ]
Gene Expression Viewer (FireBrowse)TEKT1 [ Firebrowse - Broad ]
GenevisibleExpression of TEKT1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)83659
GTEX Portal (Tissue expression)TEKT1
Human Protein AtlasENSG00000167858-TEKT1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ969V4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ969V4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ969V4
PhosPhoSitePlusQ969V4
Domains : Interpro (EBI)Tektin   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TEKT1
SuperfamilyQ969V4
AlphaFold pdb e-kbQ969V4   
Human Protein Atlas [tissue]ENSG00000167858-TEKT1 [tissue]
HPRD10611
Protein Interaction databases
DIP (DOE-UCLA)Q969V4
IntAct (EBI)Q969V4
BioGRIDTEKT1
STRING (EMBL)TEKT1
ZODIACTEKT1
Ontologies - Pathways
QuickGOQ969V4
Ontology : AmiGOprotein binding  nucleus  cytoplasm  microtubule  microtubule cytoskeleton  motile cilium  cilium assembly  cilium movement involved in cell motility  
Ontology : EGO-EBIprotein binding  nucleus  cytoplasm  microtubule  microtubule cytoskeleton  motile cilium  cilium assembly  cilium movement involved in cell motility  
NDEx NetworkTEKT1
Atlas of Cancer Signalling NetworkTEKT1
Wikipedia pathwaysTEKT1
Orthology - Evolution
OrthoDB83659
GeneTree (enSembl)ENSG00000167858
Phylogenetic Trees/Animal Genes : TreeFamTEKT1
Homologs : HomoloGeneTEKT1
Homology/Alignments : Family Browser (UCSC)TEKT1
Gene fusions - Rearrangements
Fusion : QuiverTEKT1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTEKT1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TEKT1
dbVarTEKT1
ClinVarTEKT1
MonarchTEKT1
1000_GenomesTEKT1 
Exome Variant ServerTEKT1
GNOMAD BrowserENSG00000167858
Varsome BrowserTEKT1
ACMGTEKT1 variants
VarityQ969V4
Genomic Variants (DGV)TEKT1 [DGVbeta]
DECIPHERTEKT1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTEKT1 
Mutations
ICGC Data PortalTEKT1 
TCGA Data PortalTEKT1 
Broad Tumor PortalTEKT1
OASIS PortalTEKT1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTEKT1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTEKT1
Mutations and Diseases : HGMDTEKT1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTEKT1
DgiDB (Drug Gene Interaction Database)TEKT1
DoCM (Curated mutations)TEKT1
CIViC (Clinical Interpretations of Variants in Cancer)TEKT1
Cancer3DTEKT1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609002   
Orphanet
DisGeNETTEKT1
MedgenTEKT1
Genetic Testing Registry TEKT1
NextProtQ969V4 [Medical]
GENETestsTEKT1
Target ValidationTEKT1
Huge Navigator TEKT1 [HugePedia]
ClinGenTEKT1
Clinical trials, drugs, therapy
MyCancerGenomeTEKT1
Protein Interactions : CTDTEKT1
Pharm GKB GenePA37976
PharosQ969V4
Clinical trialTEKT1
Miscellaneous
canSAR (ICR)TEKT1
HarmonizomeTEKT1
DataMed IndexTEKT1
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTEKT1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:25:10 CEST 2021

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