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TEKT2 (tektin 2)

Identity

Alias_namestektin 2 (testicular)
Alias_symbol (synonym)TEKTB1
Other aliasTEKTIN-T
h-tektin-t
HGNC (Hugo) TEKT2
LocusID (NCBI) 27285
Atlas_Id 74615
Location 1p34.3  [Link to chromosome band 1p34]
Location_base_pair Starts at 36084075 and ends at 36088275 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TEKT2   11725
Cards
Entrez_Gene (NCBI)TEKT2  27285  tektin 2
AliasesTEKTB1; TEKTIN-T; h-tektin-t
GeneCards (Weizmann)TEKT2
Ensembl hg19 (Hinxton)ENSG00000092850 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000092850 [Gene_View]  chr1:36084075-36088275 [Contig_View]  TEKT2 [Vega]
ICGC DataPortalENSG00000092850
TCGA cBioPortalTEKT2
AceView (NCBI)TEKT2
Genatlas (Paris)TEKT2
WikiGenes27285
SOURCE (Princeton)TEKT2
Genetics Home Reference (NIH)TEKT2
Genomic and cartography
GoldenPath hg38 (UCSC)TEKT2  -     chr1:36084075-36088275 +  1p34.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TEKT2  -     1p34.3   [Description]    (hg19-Feb_2009)
EnsemblTEKT2 - 1p34.3 [CytoView hg19]  TEKT2 - 1p34.3 [CytoView hg38]
Mapping of homologs : NCBITEKT2 [Mapview hg19]  TEKT2 [Mapview hg38]
OMIM608953   
Gene and transcription
Genbank (Entrez)AB033823 AF054910 AK313610 BC022005 BC035620
RefSeq transcript (Entrez)NM_014466
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TEKT2
Cluster EST : UnigeneHs.127111 [ NCBI ]
CGAP (NCI)Hs.127111
Alternative Splicing GalleryENSG00000092850
Gene ExpressionTEKT2 [ NCBI-GEO ]   TEKT2 [ EBI - ARRAY_EXPRESS ]   TEKT2 [ SEEK ]   TEKT2 [ MEM ]
Gene Expression Viewer (FireBrowse)TEKT2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)27285
GTEX Portal (Tissue expression)TEKT2
Human Protein AtlasENSG00000092850-TEKT2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UIF3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UIF3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UIF3
Splice isoforms : SwissVarQ9UIF3
PhosPhoSitePlusQ9UIF3
Domains : Interpro (EBI)Tektin   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TEKT2
DMDM Disease mutations27285
Blocks (Seattle)TEKT2
SuperfamilyQ9UIF3
Human Protein Atlas [tissue]ENSG00000092850-TEKT2 [tissue]
Peptide AtlasQ9UIF3
HPRD16410
IPIIPI00296387   IPI00983964   IPI00984466   
Protein Interaction databases
DIP (DOE-UCLA)Q9UIF3
IntAct (EBI)Q9UIF3
FunCoupENSG00000092850
BioGRIDTEKT2
STRING (EMBL)TEKT2
ZODIACTEKT2
Ontologies - Pathways
QuickGOQ9UIF3
Ontology : AmiGOnucleus  cytoplasm  microtubule  flagellated sperm motility  sperm flagellum  inner dynein arm assembly  cilium assembly  cilium movement involved in cell motility  
Ontology : EGO-EBInucleus  cytoplasm  microtubule  flagellated sperm motility  sperm flagellum  inner dynein arm assembly  cilium assembly  cilium movement involved in cell motility  
NDEx NetworkTEKT2
Atlas of Cancer Signalling NetworkTEKT2
Wikipedia pathwaysTEKT2
Orthology - Evolution
OrthoDB27285
GeneTree (enSembl)ENSG00000092850
Phylogenetic Trees/Animal Genes : TreeFamTEKT2
HOVERGENQ9UIF3
HOGENOMQ9UIF3
Homologs : HomoloGeneTEKT2
Homology/Alignments : Family Browser (UCSC)TEKT2
Gene fusions - Rearrangements
Fusion: Tumor Portal TEKT2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTEKT2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TEKT2
dbVarTEKT2
ClinVarTEKT2
1000_GenomesTEKT2 
Exome Variant ServerTEKT2
ExAC (Exome Aggregation Consortium)ENSG00000092850
GNOMAD BrowserENSG00000092850
Genetic variants : HAPMAP27285
Genomic Variants (DGV)TEKT2 [DGVbeta]
DECIPHERTEKT2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTEKT2 
Mutations
ICGC Data PortalTEKT2 
TCGA Data PortalTEKT2 
Broad Tumor PortalTEKT2
OASIS PortalTEKT2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTEKT2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTEKT2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TEKT2
DgiDB (Drug Gene Interaction Database)TEKT2
DoCM (Curated mutations)TEKT2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TEKT2 (select a term)
intoGenTEKT2
Cancer3DTEKT2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608953   
Orphanet
MedgenTEKT2
Genetic Testing Registry TEKT2
NextProtQ9UIF3 [Medical]
TSGene27285
GENETestsTEKT2
Target ValidationTEKT2
Huge Navigator TEKT2 [HugePedia]
snp3D : Map Gene to Disease27285
BioCentury BCIQTEKT2
ClinGenTEKT2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD27285
Chemical/Pharm GKB GenePA36442
Clinical trialTEKT2
Miscellaneous
canSAR (ICR)TEKT2 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTEKT2
EVEXTEKT2
GoPubMedTEKT2
iHOPTEKT2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:32:04 CET 2017

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