Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TEKT5 (tektin 5)

Identity

Alias_symbol (synonym)FLJ32871
CT149
Other alias
HGNC (Hugo) TEKT5
LocusID (NCBI) 146279
Atlas_Id 74618
Location 16p13.13  [Link to chromosome band 16p13]
Location_base_pair Starts at 10627504 and ends at 10694945 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
TEKT5 (16p13.13) / RMI2 (16p13.13)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TEKT5   26554
Cards
Entrez_Gene (NCBI)TEKT5  146279  tektin 5
AliasesCT149
GeneCards (Weizmann)TEKT5
Ensembl hg19 (Hinxton)ENSG00000153060 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000153060 [Gene_View]  chr16:10627504-10694945 [Contig_View]  TEKT5 [Vega]
ICGC DataPortalENSG00000153060
TCGA cBioPortalTEKT5
AceView (NCBI)TEKT5
Genatlas (Paris)TEKT5
WikiGenes146279
SOURCE (Princeton)TEKT5
Genetics Home Reference (NIH)TEKT5
Genomic and cartography
GoldenPath hg38 (UCSC)TEKT5  -     chr16:10627504-10694945 -  16p13.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TEKT5  -     16p13.13   [Description]    (hg19-Feb_2009)
EnsemblTEKT5 - 16p13.13 [CytoView hg19]  TEKT5 - 16p13.13 [CytoView hg38]
Mapping of homologs : NCBITEKT5 [Mapview hg19]  TEKT5 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK057433 BC041081 BC130336 BC130338 HQ258441
RefSeq transcript (Entrez)NM_144674
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TEKT5
Cluster EST : UnigeneHs.143519 [ NCBI ]
CGAP (NCI)Hs.143519
Alternative Splicing GalleryENSG00000153060
Gene ExpressionTEKT5 [ NCBI-GEO ]   TEKT5 [ EBI - ARRAY_EXPRESS ]   TEKT5 [ SEEK ]   TEKT5 [ MEM ]
Gene Expression Viewer (FireBrowse)TEKT5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)146279
GTEX Portal (Tissue expression)TEKT5
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96M29   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96M29  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96M29
Splice isoforms : SwissVarQ96M29
PhosPhoSitePlusQ96M29
Domains : Interpro (EBI)Tektin   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TEKT5
DMDM Disease mutations146279
Blocks (Seattle)TEKT5
SuperfamilyQ96M29
Human Protein AtlasENSG00000153060
Peptide AtlasQ96M29
HPRD08736
IPIIPI00065229   
Protein Interaction databases
DIP (DOE-UCLA)Q96M29
IntAct (EBI)Q96M29
FunCoupENSG00000153060
BioGRIDTEKT5
STRING (EMBL)TEKT5
ZODIACTEKT5
Ontologies - Pathways
QuickGOQ96M29
Ontology : AmiGOprotein binding  nucleus  flagellated sperm motility  sperm flagellum  cilium assembly  cilium movement involved in cell motility  
Ontology : EGO-EBIprotein binding  nucleus  flagellated sperm motility  sperm flagellum  cilium assembly  cilium movement involved in cell motility  
NDEx NetworkTEKT5
Atlas of Cancer Signalling NetworkTEKT5
Wikipedia pathwaysTEKT5
Orthology - Evolution
OrthoDB146279
GeneTree (enSembl)ENSG00000153060
Phylogenetic Trees/Animal Genes : TreeFamTEKT5
HOVERGENQ96M29
HOGENOMQ96M29
Homologs : HomoloGeneTEKT5
Homology/Alignments : Family Browser (UCSC)TEKT5
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTEKT5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TEKT5
dbVarTEKT5
ClinVarTEKT5
1000_GenomesTEKT5 
Exome Variant ServerTEKT5
ExAC (Exome Aggregation Consortium)TEKT5 (select the gene name)
Genetic variants : HAPMAP146279
Genomic Variants (DGV)TEKT5 [DGVbeta]
DECIPHERTEKT5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTEKT5 
Mutations
ICGC Data PortalTEKT5 
TCGA Data PortalTEKT5 
Broad Tumor PortalTEKT5
OASIS PortalTEKT5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTEKT5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTEKT5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TEKT5
DgiDB (Drug Gene Interaction Database)TEKT5
DoCM (Curated mutations)TEKT5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TEKT5 (select a term)
intoGenTEKT5
Cancer3DTEKT5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTEKT5
Genetic Testing Registry TEKT5
NextProtQ96M29 [Medical]
TSGene146279
GENETestsTEKT5
Target ValidationTEKT5
Huge Navigator TEKT5 [HugePedia]
snp3D : Map Gene to Disease146279
BioCentury BCIQTEKT5
ClinGenTEKT5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD146279
Chemical/Pharm GKB GenePA162405603
Clinical trialTEKT5
Miscellaneous
canSAR (ICR)TEKT5 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTEKT5
EVEXTEKT5
GoPubMedTEKT5
iHOPTEKT5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 31 15:45:14 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.