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TEN1 (TEN1, CST complex subunit)

Identity

Alias_namesC17orf106
chromosome 17 open reading frame 106
TEN1 telomerase capping complex subunit homolog (S. cerevisiae)
TEN1 CST complex subunit
Alias_symbol (synonym)FLJ39785
Other alias
HGNC (Hugo) TEN1
LocusID (NCBI) 100134934
Atlas_Id 74620
Location 17q25.1  [Link to chromosome band 17q25]
Location_base_pair Starts at 75979217 and ends at 76000586 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
TEN1 (17q25.1) / CDK3 (17q25.1)TEN1 (17q25.1) / UNK (17q25.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TEN1   37242
Cards
Entrez_Gene (NCBI)TEN1  100134934  TEN1, CST complex subunit
AliasesC17orf106
GeneCards (Weizmann)TEN1
Ensembl hg19 (Hinxton)ENSG00000257949 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000257949 [Gene_View]  chr17:75979217-76000586 [Contig_View]  TEN1 [Vega]
ICGC DataPortalENSG00000257949
TCGA cBioPortalTEN1
AceView (NCBI)TEN1
Genatlas (Paris)TEN1
WikiGenes100134934
SOURCE (Princeton)TEN1
Genetics Home Reference (NIH)TEN1
Genomic and cartography
GoldenPath hg38 (UCSC)TEN1  -     chr17:75979217-76000586 +  17q25.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TEN1  -     17q25.1   [Description]    (hg19-Feb_2009)
EnsemblTEN1 - 17q25.1 [CytoView hg19]  TEN1 - 17q25.1 [CytoView hg38]
Mapping of homologs : NCBITEN1 [Mapview hg19]  TEN1 [Mapview hg38]
OMIM613130   
Gene and transcription
Genbank (Entrez)BC047782 BX648576 DB216497 FJ790671
RefSeq transcript (Entrez)NM_001113324
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TEN1
Cluster EST : UnigeneHs.593566 [ NCBI ]
CGAP (NCI)Hs.593566
Alternative Splicing GalleryENSG00000257949
Gene ExpressionTEN1 [ NCBI-GEO ]   TEN1 [ EBI - ARRAY_EXPRESS ]   TEN1 [ SEEK ]   TEN1 [ MEM ]
Gene Expression Viewer (FireBrowse)TEN1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100134934
GTEX Portal (Tissue expression)TEN1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86WV5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86WV5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86WV5
Splice isoforms : SwissVarQ86WV5
PhosPhoSitePlusQ86WV5
Domains : Interpro (EBI)Ten1_animal_plant   
Domain families : Pfam (Sanger)Ten1_2 (PF15490)   
Domain families : Pfam (NCBI)pfam15490   
Conserved Domain (NCBI)TEN1
DMDM Disease mutations100134934
Blocks (Seattle)TEN1
PDB (SRS)4JOI   
PDB (PDBSum)4JOI   
PDB (IMB)4JOI   
PDB (RSDB)4JOI   
Structural Biology KnowledgeBase4JOI   
SCOP (Structural Classification of Proteins)4JOI   
CATH (Classification of proteins structures)4JOI   
SuperfamilyQ86WV5
Human Protein AtlasENSG00000257949
Peptide AtlasQ86WV5
IPIIPI00334671   
Protein Interaction databases
DIP (DOE-UCLA)Q86WV5
IntAct (EBI)Q86WV5
FunCoupENSG00000257949
BioGRIDTEN1
STRING (EMBL)TEN1
ZODIACTEN1
Ontologies - Pathways
QuickGOQ86WV5
Ontology : AmiGOnuclear chromosome, telomeric region  single-stranded DNA binding  protein binding  nucleus  telomere capping  negative regulation of telomere maintenance via telomerase  telomeric DNA binding  CST complex  CST complex  
Ontology : EGO-EBInuclear chromosome, telomeric region  single-stranded DNA binding  protein binding  nucleus  telomere capping  negative regulation of telomere maintenance via telomerase  telomeric DNA binding  CST complex  CST complex  
NDEx NetworkTEN1
Atlas of Cancer Signalling NetworkTEN1
Wikipedia pathwaysTEN1
Orthology - Evolution
OrthoDB100134934
GeneTree (enSembl)ENSG00000257949
Phylogenetic Trees/Animal Genes : TreeFamTEN1
HOVERGENQ86WV5
HOGENOMQ86WV5
Homologs : HomoloGeneTEN1
Homology/Alignments : Family Browser (UCSC)TEN1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTEN1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TEN1
dbVarTEN1
ClinVarTEN1
1000_GenomesTEN1 
Exome Variant ServerTEN1
ExAC (Exome Aggregation Consortium)TEN1 (select the gene name)
Genetic variants : HAPMAP100134934
Genomic Variants (DGV)TEN1 [DGVbeta]
DECIPHERTEN1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTEN1 
Mutations
ICGC Data PortalTEN1 
TCGA Data PortalTEN1 
Broad Tumor PortalTEN1
OASIS PortalTEN1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTEN1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTEN1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TEN1
DgiDB (Drug Gene Interaction Database)TEN1
DoCM (Curated mutations)TEN1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TEN1 (select a term)
intoGenTEN1
Cancer3DTEN1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613130   
Orphanet
MedgenTEN1
Genetic Testing Registry TEN1
NextProtQ86WV5 [Medical]
TSGene100134934
GENETestsTEN1
Target ValidationTEN1
Huge Navigator TEN1 [HugePedia]
snp3D : Map Gene to Disease100134934
BioCentury BCIQTEN1
ClinGenTEN1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100134934
Chemical/Pharm GKB GenePA165431550
Clinical trialTEN1
Miscellaneous
canSAR (ICR)TEN1 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTEN1
EVEXTEN1
GoPubMedTEN1
iHOPTEN1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:41:14 CEST 2017

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