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TENM3 (teneurin transmembrane protein 3)

Identity

Alias_namesODZ3
odz
Alias_symbol (synonym)Ten-M3
KIAA1455
Other aliasMCOPCB9
TNM3
Ten-m3
ten-3
HGNC (Hugo) TENM3
LocusID (NCBI) 55714
Atlas_Id 41604
Location 4q34.3  [Link to chromosome band 4q34]
Location_base_pair Starts at 182243431 and ends at 182803024 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
WWC2 (4q35.1) / TENM3 (4q34.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TENM3   29944
Cards
Entrez_Gene (NCBI)TENM3  55714  teneurin transmembrane protein 3
AliasesMCOPCB9; ODZ3; TNM3; Ten-m3; 
ten-3
GeneCards (Weizmann)TENM3
Ensembl hg19 (Hinxton)ENSG00000218336 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000218336 [Gene_View]  chr4:182243431-182803024 [Contig_View]  TENM3 [Vega]
ICGC DataPortalENSG00000218336
TCGA cBioPortalTENM3
AceView (NCBI)TENM3
Genatlas (Paris)TENM3
WikiGenes55714
SOURCE (Princeton)TENM3
Genetics Home Reference (NIH)TENM3
Genomic and cartography
GoldenPath hg38 (UCSC)TENM3  -     chr4:182243431-182803024 +  4q34.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TENM3  -     4q34.3   [Description]    (hg19-Feb_2009)
EnsemblTENM3 - 4q34.3 [CytoView hg19]  TENM3 - 4q34.3 [CytoView hg38]
Mapping of homologs : NCBITENM3 [Mapview hg19]  TENM3 [Mapview hg38]
OMIM610083   615145   
Gene and transcription
Genbank (Entrez)AB040888 AF195420 AK001336 AK001748 AK027473
RefSeq transcript (Entrez)NM_001080477
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TENM3
Cluster EST : UnigeneHs.130438 [ NCBI ]
CGAP (NCI)Hs.130438
Alternative Splicing GalleryENSG00000218336
Gene ExpressionTENM3 [ NCBI-GEO ]   TENM3 [ EBI - ARRAY_EXPRESS ]   TENM3 [ SEEK ]   TENM3 [ MEM ]
Gene Expression Viewer (FireBrowse)TENM3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55714
GTEX Portal (Tissue expression)TENM3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9P273   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9P273  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9P273
Splice isoforms : SwissVarQ9P273
PhosPhoSitePlusQ9P273
Domaine pattern : Prosite (Expaxy)EGF_1 (PS00022)    EGF_2 (PS01186)    EGF_3 (PS50026)    TENEURIN_N (PS51361)   
Domains : Interpro (EBI)6-blade_b-propeller_TolB-like    CarboxyPept-like_regulatory    EGF-like_CS    EGF-like_dom    Rhs_assc_core    Ten-3    Ten_N    Tox-GHH_dom    WD40_repeat_dom    YD   
Domain families : Pfam (Sanger)Ten_N (PF06484)    Tox-GHH (PF15636)   
Domain families : Pfam (NCBI)pfam06484    pfam15636   
Domain families : Smart (EMBL)EGF (SM00181)  
Conserved Domain (NCBI)TENM3
DMDM Disease mutations55714
Blocks (Seattle)TENM3
SuperfamilyQ9P273
Human Protein AtlasENSG00000218336
Peptide AtlasQ9P273
IPIIPI00398020   IPI00967507   IPI00968291   
Protein Interaction databases
DIP (DOE-UCLA)Q9P273
IntAct (EBI)Q9P273
FunCoupENSG00000218336
BioGRIDTENM3
STRING (EMBL)TENM3
ZODIACTENM3
Ontologies - Pathways
QuickGOQ9P273
Ontology : AmiGOhomophilic cell adhesion via plasma membrane adhesion molecules  signal transduction  positive regulation of neuron projection development  membrane  integral component of membrane  axon  protein homodimerization activity  protein heterodimerization activity  camera-type eye morphogenesis  self proteolysis  
Ontology : EGO-EBIhomophilic cell adhesion via plasma membrane adhesion molecules  signal transduction  positive regulation of neuron projection development  membrane  integral component of membrane  axon  protein homodimerization activity  protein heterodimerization activity  camera-type eye morphogenesis  self proteolysis  
NDEx NetworkTENM3
Atlas of Cancer Signalling NetworkTENM3
Wikipedia pathwaysTENM3
Orthology - Evolution
OrthoDB55714
GeneTree (enSembl)ENSG00000218336
Phylogenetic Trees/Animal Genes : TreeFamTENM3
HOVERGENQ9P273
HOGENOMQ9P273
Homologs : HomoloGeneTENM3
Homology/Alignments : Family Browser (UCSC)TENM3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTENM3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TENM3
dbVarTENM3
ClinVarTENM3
1000_GenomesTENM3 
Exome Variant ServerTENM3
ExAC (Exome Aggregation Consortium)TENM3 (select the gene name)
Genetic variants : HAPMAP55714
Genomic Variants (DGV)TENM3 [DGVbeta]
DECIPHERTENM3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTENM3 
Mutations
ICGC Data PortalTENM3 
TCGA Data PortalTENM3 
Broad Tumor PortalTENM3
OASIS PortalTENM3 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDTENM3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TENM3
DgiDB (Drug Gene Interaction Database)TENM3
DoCM (Curated mutations)TENM3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TENM3 (select a term)
intoGenTENM3
Cancer3DTENM3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610083    615145   
Orphanet13955   
MedgenTENM3
Genetic Testing Registry TENM3
NextProtQ9P273 [Medical]
TSGene55714
GENETestsTENM3
Target ValidationTENM3
Huge Navigator TENM3 [HugePedia]
snp3D : Map Gene to Disease55714
BioCentury BCIQTENM3
ClinGenTENM3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55714
Chemical/Pharm GKB GenePA134961178
Clinical trialTENM3
Miscellaneous
canSAR (ICR)TENM3 (select the gene name)
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTENM3
EVEXTENM3
GoPubMedTENM3
iHOPTENM3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:34:41 CEST 2017

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