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TENT5A (terminal nucleotidyltransferase 5A)

Identity

Other aliasC6orf37
FAM46A
OI18
XTP11
HGNC (Hugo) TENT5A
LocusID (NCBI) 55603
Atlas_Id 57547
Location 6q14.1  [Link to chromosome band 6q14]
Location_base_pair Starts at 81745730 and ends at 81752711 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)TENT5A   18345
Cards
Entrez_Gene (NCBI)TENT5A  55603  terminal nucleotidyltransferase 5A
AliasesC6orf37; FAM46A; OI18; XTP11
GeneCards (Weizmann)TENT5A
Ensembl hg19 (Hinxton)ENSG00000112773 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000112773 [Gene_View]  ENSG00000112773 [Sequence]  chr6:81745730-81752711 [Contig_View]  TENT5A [Vega]
ICGC DataPortalENSG00000112773
TCGA cBioPortalTENT5A
AceView (NCBI)TENT5A
Genatlas (Paris)TENT5A
WikiGenes55603
SOURCE (Princeton)TENT5A
Genetics Home Reference (NIH)TENT5A
Genomic and cartography
GoldenPath hg38 (UCSC)TENT5A  -     chr6:81745730-81752711 -  6q14.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TENT5A  -     6q14.1   [Description]    (hg19-Feb_2009)
EnsemblTENT5A - 6q14.1 [CytoView hg19]  TENT5A - 6q14.1 [CytoView hg38]
Mapping of homologs : NCBITENT5A [Mapview hg19]  TENT5A [Mapview hg38]
OMIM611357   617952   
Gene and transcription
Genbank (Entrez)AF350451 AI131001 AJ420583 AJ420591 AJ420592
RefSeq transcript (Entrez)NM_017633
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TENT5A
Cluster EST : UnigeneHs.10784 [ NCBI ]
CGAP (NCI)Hs.10784
Alternative Splicing GalleryENSG00000112773
Gene ExpressionTENT5A [ NCBI-GEO ]   TENT5A [ EBI - ARRAY_EXPRESS ]   TENT5A [ SEEK ]   TENT5A [ MEM ]
Gene Expression Viewer (FireBrowse)TENT5A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55603
GTEX Portal (Tissue expression)TENT5A
Human Protein AtlasENSG00000112773-TENT5A [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96IP4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96IP4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96IP4
Splice isoforms : SwissVarQ96IP4
PhosPhoSitePlusQ96IP4
Domains : Interpro (EBI)DUF1693   
Domain families : Pfam (Sanger)NTP_transf_7 (PF07984)   
Domain families : Pfam (NCBI)pfam07984   
Domain families : Smart (EMBL)DUF1693 (SM01153)  
Conserved Domain (NCBI)TENT5A
DMDM Disease mutations55603
Blocks (Seattle)TENT5A
SuperfamilyQ96IP4
Human Protein Atlas [tissue]ENSG00000112773-TENT5A [tissue]
Peptide AtlasQ96IP4
IPIIPI00640117   IPI00410700   IPI00643049   IPI00643508   IPI00647115   
Protein Interaction databases
DIP (DOE-UCLA)Q96IP4
IntAct (EBI)Q96IP4
FunCoupENSG00000112773
BioGRIDTENT5A
STRING (EMBL)TENT5A
ZODIACTENT5A
Ontologies - Pathways
QuickGOQ96IP4
Ontology : AmiGORNA binding  protein binding  response to bacterium  RNA adenylyltransferase activity  
Ontology : EGO-EBIRNA binding  protein binding  response to bacterium  RNA adenylyltransferase activity  
NDEx NetworkTENT5A
Atlas of Cancer Signalling NetworkTENT5A
Wikipedia pathwaysTENT5A
Orthology - Evolution
OrthoDB55603
GeneTree (enSembl)ENSG00000112773
Phylogenetic Trees/Animal Genes : TreeFamTENT5A
HOVERGENQ96IP4
HOGENOMQ96IP4
Homologs : HomoloGeneTENT5A
Homology/Alignments : Family Browser (UCSC)TENT5A
Gene fusions - Rearrangements
Fusion : QuiverTENT5A
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTENT5A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TENT5A
dbVarTENT5A
ClinVarTENT5A
1000_GenomesTENT5A 
Exome Variant ServerTENT5A
ExAC (Exome Aggregation Consortium)ENSG00000112773
GNOMAD BrowserENSG00000112773
Varsome BrowserTENT5A
Genetic variants : HAPMAP55603
Genomic Variants (DGV)TENT5A [DGVbeta]
DECIPHERTENT5A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTENT5A 
Mutations
ICGC Data PortalTENT5A 
TCGA Data PortalTENT5A 
Broad Tumor PortalTENT5A
OASIS PortalTENT5A [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDTENT5A
BioMutasearch TENT5A
DgiDB (Drug Gene Interaction Database)TENT5A
DoCM (Curated mutations)TENT5A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TENT5A (select a term)
intoGenTENT5A
Cancer3DTENT5A(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611357    617952   
Orphanet
DisGeNETTENT5A
MedgenTENT5A
Genetic Testing Registry TENT5A
NextProtQ96IP4 [Medical]
TSGene55603
GENETestsTENT5A
Target ValidationTENT5A
Huge Navigator TENT5A [HugePedia]
snp3D : Map Gene to Disease55603
BioCentury BCIQTENT5A
ClinGenTENT5A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55603
Chemical/Pharm GKB GenePA38531
Clinical trialTENT5A
Miscellaneous
canSAR (ICR)TENT5A (select the gene name)
Probes
Litterature
PubMed32 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTENT5A
EVEXTENT5A
GoPubMedTENT5A
iHOPTENT5A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 6 11:44:32 CET 2018

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