Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TENT5C (terminal nucleotidyltransferase 5C)

Identity

Alias (NCBI)FAM46C
HGNC (Hugo) TENT5C
HGNC Alias symbFLJ20202
HGNC Previous nameFAM46C
HGNC Previous namefamily with sequence similarity 46, member C
 family with sequence similarity 46 member C
LocusID (NCBI) 54855
Atlas_Id 53755
Location 1p12  [Link to chromosome band 1p12]
Location_base_pair Starts at 117606048 and ends at 117628389 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)TENT5C   24712
Cards
Entrez_Gene (NCBI)TENT5C  54855  terminal nucleotidyltransferase 5C
AliasesFAM46C
GeneCards (Weizmann)TENT5C
Ensembl hg19 (Hinxton)ENSG00000183508 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000183508 [Gene_View]  ENSG00000183508 [Sequence]  chr1:117606048-117628389 [Contig_View]  TENT5C [Vega]
ICGC DataPortalENSG00000183508
TCGA cBioPortalTENT5C
AceView (NCBI)TENT5C
Genatlas (Paris)TENT5C
WikiGenes54855
SOURCE (Princeton)TENT5C
Genetics Home Reference (NIH)TENT5C
Genomic and cartography
GoldenPath hg38 (UCSC)TENT5C  -     chr1:117606048-117628389 +  1p12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TENT5C  -     1p12   [Description]    (hg19-Feb_2009)
GoldenPathTENT5C - 1p12 [CytoView hg19]  TENT5C - 1p12 [CytoView hg38]
ImmunoBaseENSG00000183508
genome Data Viewer NCBITENT5C [Mapview hg19]  
OMIM613952   
Gene and transcription
Genbank (Entrez)AK000209 AK091327 AL046016 BC036516 BC131726
RefSeq transcript (Entrez)NM_017709
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TENT5C
Alternative Splicing GalleryENSG00000183508
Gene ExpressionTENT5C [ NCBI-GEO ]   TENT5C [ EBI - ARRAY_EXPRESS ]   TENT5C [ SEEK ]   TENT5C [ MEM ]
Gene Expression Viewer (FireBrowse)TENT5C [ Firebrowse - Broad ]
GenevisibleExpression of TENT5C in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54855
GTEX Portal (Tissue expression)TENT5C
Human Protein AtlasENSG00000183508-TENT5C [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5VWP2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5VWP2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5VWP2
Splice isoforms : SwissVarQ5VWP2
PhosPhoSitePlusQ5VWP2
Domains : Interpro (EBI)TET5   
Domain families : Pfam (Sanger)NTP_transf_7 (PF07984)   
Domain families : Pfam (NCBI)pfam07984   
Domain families : Smart (EMBL)DUF1693 (SM01153)  
Conserved Domain (NCBI)TENT5C
DMDM Disease mutations54855
Blocks (Seattle)TENT5C
SuperfamilyQ5VWP2
Human Protein Atlas [tissue]ENSG00000183508-TENT5C [tissue]
Peptide AtlasQ5VWP2
HPRD13312
IPIIPI00646224   
Protein Interaction databases
DIP (DOE-UCLA)Q5VWP2
IntAct (EBI)Q5VWP2
FunCoupENSG00000183508
BioGRIDTENT5C
STRING (EMBL)TENT5C
ZODIACTENT5C
Ontologies - Pathways
QuickGOQ5VWP2
Ontology : AmiGOin utero embryonic development  RNA binding  protein binding  nucleus  cytoplasm  viral process  mRNA stabilization  mRNA stabilization  RNA adenylyltransferase activity  RNA adenylyltransferase activity  
Ontology : EGO-EBIin utero embryonic development  RNA binding  protein binding  nucleus  cytoplasm  viral process  mRNA stabilization  mRNA stabilization  RNA adenylyltransferase activity  RNA adenylyltransferase activity  
NDEx NetworkTENT5C
Atlas of Cancer Signalling NetworkTENT5C
Wikipedia pathwaysTENT5C
Orthology - Evolution
OrthoDB54855
GeneTree (enSembl)ENSG00000183508
Phylogenetic Trees/Animal Genes : TreeFamTENT5C
HOGENOMQ5VWP2
Homologs : HomoloGeneTENT5C
Homology/Alignments : Family Browser (UCSC)TENT5C
Gene fusions - Rearrangements
Fusion : MitelmanDAB1/FAM46C [1p32.2/1p12]  
Fusion : QuiverTENT5C
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTENT5C [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TENT5C
dbVarTENT5C
ClinVarTENT5C
1000_GenomesTENT5C 
Exome Variant ServerTENT5C
GNOMAD BrowserENSG00000183508
Varsome BrowserTENT5C
Genetic variants : HAPMAP54855
Genomic Variants (DGV)TENT5C [DGVbeta]
DECIPHERTENT5C [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTENT5C 
Mutations
ICGC Data PortalTENT5C 
TCGA Data PortalTENT5C 
Broad Tumor PortalTENT5C
OASIS PortalTENT5C [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTENT5C  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTENT5C
Mutations and Diseases : HGMDTENT5C
intOGen PortalFAM46C
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TENT5C
DgiDB (Drug Gene Interaction Database)TENT5C
DoCM (Curated mutations)TENT5C (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TENT5C (select a term)
intoGenTENT5C
Cancer3DTENT5C(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613952   
Orphanet
DisGeNETTENT5C
MedgenTENT5C
Genetic Testing Registry TENT5C
NextProtQ5VWP2 [Medical]
TSGene54855
GENETestsTENT5C
Target ValidationTENT5C
Huge Navigator TENT5C [HugePedia]
snp3D : Map Gene to Disease54855
BioCentury BCIQTENT5C
ClinGenTENT5C
Clinical trials, drugs, therapy
Protein Interactions : CTD54855
Pharm GKB GenePA134955264
Clinical trialTENT5C
Miscellaneous
canSAR (ICR)TENT5C (select the gene name)
HarmonizomeTENT5C
DataMed IndexTENT5C
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTENT5C
EVEXTENT5C
GoPubMedTENT5C
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Jul 16 15:39:08 CEST 2020

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.