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TENT5D (terminal nucleotidyltransferase 5D)

Identity

Alias_namesfamily with sequence similarity 46
Alias_symbol (synonym)MGC26999
CT1.26
CT112
Other aliasFAM46D
HGNC (Hugo) TENT5D
LocusID (NCBI) 169966
Atlas_Id 51247
Location Xq21.1  [Link to chromosome band Xq21]
Location_base_pair Starts at 80420447 and ends at 80445311 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)TENT5D   28399
Cards
Entrez_Gene (NCBI)TENT5D  169966  terminal nucleotidyltransferase 5D
AliasesCT1.26; CT112; FAM46D
GeneCards (Weizmann)TENT5D
Ensembl hg19 (Hinxton)ENSG00000174016 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000174016 [Gene_View]  ENSG00000174016 [Sequence]  chrX:80420447-80445311 [Contig_View]  TENT5D [Vega]
ICGC DataPortalENSG00000174016
TCGA cBioPortalTENT5D
AceView (NCBI)TENT5D
Genatlas (Paris)TENT5D
WikiGenes169966
SOURCE (Princeton)TENT5D
Genetics Home Reference (NIH)TENT5D
Genomic and cartography
GoldenPath hg38 (UCSC)TENT5D  -     chrX:80420447-80445311 +  Xq21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TENT5D  -     Xq21.1   [Description]    (hg19-Feb_2009)
EnsemblTENT5D - Xq21.1 [CytoView hg19]  TENT5D - Xq21.1 [CytoView hg38]
Mapping of homologs : NCBITENT5D [Mapview hg19]  TENT5D [Mapview hg38]
OMIM300976   
Gene and transcription
Genbank (Entrez)AK128147 AK313875 BC028710 BC030784 BC034979
RefSeq transcript (Entrez)NM_001170574 NM_152630
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TENT5D
Cluster EST : UnigeneHs.367959 [ NCBI ]
CGAP (NCI)Hs.367959
Alternative Splicing GalleryENSG00000174016
Gene ExpressionTENT5D [ NCBI-GEO ]   TENT5D [ EBI - ARRAY_EXPRESS ]   TENT5D [ SEEK ]   TENT5D [ MEM ]
Gene Expression Viewer (FireBrowse)TENT5D [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)169966
GTEX Portal (Tissue expression)TENT5D
Human Protein AtlasENSG00000174016-TENT5D [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NEK8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NEK8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NEK8
Splice isoforms : SwissVarQ8NEK8
PhosPhoSitePlusQ8NEK8
Domains : Interpro (EBI)DUF1693   
Domain families : Pfam (Sanger)NTP_transf_7 (PF07984)   
Domain families : Pfam (NCBI)pfam07984   
Domain families : Smart (EMBL)DUF1693 (SM01153)  
Conserved Domain (NCBI)TENT5D
DMDM Disease mutations169966
Blocks (Seattle)TENT5D
SuperfamilyQ8NEK8
Human Protein Atlas [tissue]ENSG00000174016-TENT5D [tissue]
Peptide AtlasQ8NEK8
HPRD06643
IPIIPI00646988   
Protein Interaction databases
DIP (DOE-UCLA)Q8NEK8
IntAct (EBI)Q8NEK8
FunCoupENSG00000174016
BioGRIDTENT5D
STRING (EMBL)TENT5D
ZODIACTENT5D
Ontologies - Pathways
QuickGOQ8NEK8
Ontology : AmiGOprotein binding  RNA adenylyltransferase activity  
Ontology : EGO-EBIprotein binding  RNA adenylyltransferase activity  
NDEx NetworkTENT5D
Atlas of Cancer Signalling NetworkTENT5D
Wikipedia pathwaysTENT5D
Orthology - Evolution
OrthoDB169966
GeneTree (enSembl)ENSG00000174016
Phylogenetic Trees/Animal Genes : TreeFamTENT5D
HOVERGENQ8NEK8
HOGENOMQ8NEK8
Homologs : HomoloGeneTENT5D
Homology/Alignments : Family Browser (UCSC)TENT5D
Gene fusions - Rearrangements
Fusion : QuiverTENT5D
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTENT5D [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TENT5D
dbVarTENT5D
ClinVarTENT5D
1000_GenomesTENT5D 
Exome Variant ServerTENT5D
ExAC (Exome Aggregation Consortium)ENSG00000174016
GNOMAD BrowserENSG00000174016
Varsome BrowserTENT5D
Genetic variants : HAPMAP169966
Genomic Variants (DGV)TENT5D [DGVbeta]
DECIPHERTENT5D [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTENT5D 
Mutations
ICGC Data PortalTENT5D 
TCGA Data PortalTENT5D 
Broad Tumor PortalTENT5D
OASIS PortalTENT5D [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDTENT5D
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch TENT5D
DgiDB (Drug Gene Interaction Database)TENT5D
DoCM (Curated mutations)TENT5D (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TENT5D (select a term)
intoGenTENT5D
Cancer3DTENT5D(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300976   
Orphanet
DisGeNETTENT5D
MedgenTENT5D
Genetic Testing Registry TENT5D
NextProtQ8NEK8 [Medical]
TSGene169966
GENETestsTENT5D
Target ValidationTENT5D
Huge Navigator TENT5D [HugePedia]
snp3D : Map Gene to Disease169966
BioCentury BCIQTENT5D
ClinGenTENT5D
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD169966
Chemical/Pharm GKB GenePA134947605
Clinical trialTENT5D
Miscellaneous
canSAR (ICR)TENT5D (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTENT5D
EVEXTENT5D
GoPubMedTENT5D
iHOPTENT5D
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 6 11:44:33 CET 2018

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