Atlas of Genetics and Cytogenetics in Oncology and Haematology


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TEPSIN (TEPSIN, adaptor related protein complex 4 accessory protein)

Identity

Alias_namesC17orf56
ENTHD2
chromosome 17 open reading frame 56
ENTH domain containing 2
Alias_symbol (synonym)FLJ31528
Other alias
HGNC (Hugo) TEPSIN
LocusID (NCBI) 146705
Atlas_Id 78374
Location 17q25.3  [Link to chromosome band 17q25]
Location_base_pair Starts at 81228277 and ends at 81239091 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TEPSIN   26458
Cards
Entrez_Gene (NCBI)TEPSIN  146705  TEPSIN, adaptor related protein complex 4 accessory protein
AliasesC17orf56; ENTHD2
GeneCards (Weizmann)TEPSIN
Ensembl hg19 (Hinxton)ENSG00000167302 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000167302 [Gene_View]  chr17:81228277-81239091 [Contig_View]  TEPSIN [Vega]
ICGC DataPortalENSG00000167302
TCGA cBioPortalTEPSIN
AceView (NCBI)TEPSIN
Genatlas (Paris)TEPSIN
WikiGenes146705
SOURCE (Princeton)TEPSIN
Genetics Home Reference (NIH)TEPSIN
Genomic and cartography
GoldenPath hg38 (UCSC)TEPSIN  -     chr17:81228277-81239091 -  17q25.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TEPSIN  -     17q25.3   [Description]    (hg19-Feb_2009)
EnsemblTEPSIN - 17q25.3 [CytoView hg19]  TEPSIN - 17q25.3 [CytoView hg38]
Mapping of homologs : NCBITEPSIN [Mapview hg19]  TEPSIN [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK056090 AK127221 AK128728 BC037231 BC042155
RefSeq transcript (Entrez)NM_144679
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TEPSIN
Cluster EST : UnigeneHs.631761 [ NCBI ]
CGAP (NCI)Hs.631761
Alternative Splicing GalleryENSG00000167302
Gene ExpressionTEPSIN [ NCBI-GEO ]   TEPSIN [ EBI - ARRAY_EXPRESS ]   TEPSIN [ SEEK ]   TEPSIN [ MEM ]
Gene Expression Viewer (FireBrowse)TEPSIN [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)146705
GTEX Portal (Tissue expression)TEPSIN
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96N21   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96N21  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96N21
Splice isoforms : SwissVarQ96N21
PhosPhoSitePlusQ96N21
Domains : Interpro (EBI)ENTH    ENTH_VHS   
Domain families : Pfam (Sanger)ENTH (PF01417)   
Domain families : Pfam (NCBI)pfam01417   
Conserved Domain (NCBI)TEPSIN
DMDM Disease mutations146705
Blocks (Seattle)TEPSIN
SuperfamilyQ96N21
Human Protein AtlasENSG00000167302
Peptide AtlasQ96N21
HPRD08103
IPIIPI00043327   IPI00444617   
Protein Interaction databases
DIP (DOE-UCLA)Q96N21
IntAct (EBI)Q96N21
FunCoupENSG00000167302
BioGRIDTEPSIN
STRING (EMBL)TEPSIN
ZODIACTEPSIN
Ontologies - Pathways
QuickGOQ96N21
Ontology : AmiGOGolgi apparatus  cytosol  nuclear speck  cytoplasmic vesicle  nuclear membrane  
Ontology : EGO-EBIGolgi apparatus  cytosol  nuclear speck  cytoplasmic vesicle  nuclear membrane  
NDEx NetworkTEPSIN
Atlas of Cancer Signalling NetworkTEPSIN
Wikipedia pathwaysTEPSIN
Orthology - Evolution
OrthoDB146705
GeneTree (enSembl)ENSG00000167302
Phylogenetic Trees/Animal Genes : TreeFamTEPSIN
HOVERGENQ96N21
HOGENOMQ96N21
Homologs : HomoloGeneTEPSIN
Homology/Alignments : Family Browser (UCSC)TEPSIN
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTEPSIN [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TEPSIN
dbVarTEPSIN
ClinVarTEPSIN
1000_GenomesTEPSIN 
Exome Variant ServerTEPSIN
ExAC (Exome Aggregation Consortium)TEPSIN (select the gene name)
Genetic variants : HAPMAP146705
Genomic Variants (DGV)TEPSIN [DGVbeta]
DECIPHERTEPSIN [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTEPSIN 
Mutations
ICGC Data PortalTEPSIN 
TCGA Data PortalTEPSIN 
Broad Tumor PortalTEPSIN
OASIS PortalTEPSIN [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDTEPSIN
BioMutasearch TEPSIN
DgiDB (Drug Gene Interaction Database)TEPSIN
DoCM (Curated mutations)TEPSIN (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TEPSIN (select a term)
intoGenTEPSIN
Cancer3DTEPSIN(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTEPSIN
Genetic Testing Registry TEPSIN
NextProtQ96N21 [Medical]
TSGene146705
GENETestsTEPSIN
Huge Navigator TEPSIN [HugePedia]
snp3D : Map Gene to Disease146705
BioCentury BCIQTEPSIN
ClinGenTEPSIN
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD146705
Chemical/Pharm GKB GenePA142672239
Clinical trialTEPSIN
Miscellaneous
canSAR (ICR)TEPSIN (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTEPSIN
EVEXTEPSIN
GoPubMedTEPSIN
iHOPTEPSIN
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri May 19 11:57:45 CEST 2017

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