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TERB1 (telomere repeat binding bouquet formation protein 1)

Identity

Alias (NCBI)CCDC79
HGNC (Hugo) TERB1
HGNC Alias symbFLJ35894
HGNC Previous nameCCDC79
HGNC Previous namecoiled-coil domain containing 79
LocusID (NCBI) 283847
Atlas_Id 78420
Location 16q22.1  [Link to chromosome band 16q22]
Location_base_pair Starts at 66754640 and ends at 66801584 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TERB1   26675
Cards
Entrez_Gene (NCBI)TERB1    telomere repeat binding bouquet formation protein 1
AliasesCCDC79
GeneCards (Weizmann)TERB1
Ensembl hg19 (Hinxton)ENSG00000249961 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000249961 [Gene_View]  ENSG00000249961 [Sequence]  chr16:66754640-66801584 [Contig_View]  TERB1 [Vega]
ICGC DataPortalENSG00000249961
TCGA cBioPortalTERB1
AceView (NCBI)TERB1
Genatlas (Paris)TERB1
SOURCE (Princeton)TERB1
Genetics Home Reference (NIH)TERB1
Genomic and cartography
GoldenPath hg38 (UCSC)TERB1  -     chr16:66754640-66801584 -  16q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TERB1  -     16q22.1   [Description]    (hg19-Feb_2009)
GoldenPathTERB1 - 16q22.1 [CytoView hg19]  TERB1 - 16q22.1 [CytoView hg38]
ImmunoBaseENSG00000249961
Genome Data Viewer NCBITERB1 [Mapview hg19]  
OMIM617332   
Gene and transcription
Genbank (Entrez)AK093213 BC126109
RefSeq transcript (Entrez)NM_001136505 NM_173616
Consensus coding sequences : CCDS (NCBI)TERB1
Gene ExpressionTERB1 [ NCBI-GEO ]   TERB1 [ EBI - ARRAY_EXPRESS ]   TERB1 [ SEEK ]   TERB1 [ MEM ]
Gene Expression Viewer (FireBrowse)TERB1 [ Firebrowse - Broad ]
GenevisibleExpression of TERB1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)283847
GTEX Portal (Tissue expression)TERB1
Human Protein AtlasENSG00000249961-TERB1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NA31   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NA31  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NA31
PhosPhoSitePlusQ8NA31
Domains : Interpro (EBI)ARM-like    ARM-type_fold    Homeobox-like_sf    SANT/Myb    TERB1   
Domain families : Pfam (Sanger)Myb_DNA-binding (PF00249)   
Domain families : Pfam (NCBI)pfam00249   
Domain families : Smart (EMBL)SANT (SM00717)  
Conserved Domain (NCBI)TERB1
PDB (RSDB)5WIR    5XUP    6J07   
PDB Europe5WIR    5XUP    6J07   
PDB (PDBSum)5WIR    5XUP    6J07   
PDB (IMB)5WIR    5XUP    6J07   
Structural Biology KnowledgeBase5WIR    5XUP    6J07   
SCOP (Structural Classification of Proteins)5WIR    5XUP    6J07   
CATH (Classification of proteins structures)5WIR    5XUP    6J07   
SuperfamilyQ8NA31
AlphaFold pdb e-kbQ8NA31   
Human Protein Atlas [tissue]ENSG00000249961-TERB1 [tissue]
HPRD08197
Protein Interaction databases
DIP (DOE-UCLA)Q8NA31
IntAct (EBI)Q8NA31
BioGRIDTERB1
STRING (EMBL)TERB1
ZODIACTERB1
Ontologies - Pathways
QuickGOQ8NA31
Ontology : AmiGOchromosome, telomeric region  protein binding  nuclear inner membrane  homologous chromosome pairing at meiosis  homologous chromosome pairing at meiosis  meiotic telomere clustering  meiotic attachment of telomere to nuclear envelope  meiotic attachment of telomere to nuclear envelope  
Ontology : EGO-EBIchromosome, telomeric region  protein binding  nuclear inner membrane  homologous chromosome pairing at meiosis  homologous chromosome pairing at meiosis  meiotic telomere clustering  meiotic attachment of telomere to nuclear envelope  meiotic attachment of telomere to nuclear envelope  
NDEx NetworkTERB1
Atlas of Cancer Signalling NetworkTERB1
Wikipedia pathwaysTERB1
Orthology - Evolution
OrthoDB283847
GeneTree (enSembl)ENSG00000249961
Phylogenetic Trees/Animal Genes : TreeFamTERB1
Homologs : HomoloGeneTERB1
Homology/Alignments : Family Browser (UCSC)TERB1
Gene fusions - Rearrangements
Fusion : QuiverTERB1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTERB1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TERB1
dbVarTERB1
ClinVarTERB1
MonarchTERB1
1000_GenomesTERB1 
Exome Variant ServerTERB1
GNOMAD BrowserENSG00000249961
Varsome BrowserTERB1
ACMGTERB1 variants
VarityQ8NA31
Genomic Variants (DGV)TERB1 [DGVbeta]
DECIPHERTERB1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTERB1 
Mutations
ICGC Data PortalTERB1 
TCGA Data PortalTERB1 
Broad Tumor PortalTERB1
OASIS PortalTERB1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTERB1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTERB1
Mutations and Diseases : HGMDTERB1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTERB1
DgiDB (Drug Gene Interaction Database)TERB1
DoCM (Curated mutations)TERB1
CIViC (Clinical Interpretations of Variants in Cancer)TERB1
Cancer3DTERB1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617332   
Orphanet
DisGeNETTERB1
MedgenTERB1
Genetic Testing Registry TERB1
NextProtQ8NA31 [Medical]
GENETestsTERB1
Target ValidationTERB1
Huge Navigator TERB1 [HugePedia]
ClinGenTERB1
Clinical trials, drugs, therapy
MyCancerGenomeTERB1
Protein Interactions : CTDTERB1
Pharm GKB GenePA162381709
PharosQ8NA31
Clinical trialTERB1
Miscellaneous
canSAR (ICR)TERB1
HarmonizomeTERB1
DataMed IndexTERB1
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTERB1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:25:13 CEST 2021

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