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TERB1 (telomere repeat binding bouquet formation protein 1)

Identity

Alias_namesCCDC79
coiled-coil domain containing 79
Alias_symbol (synonym)FLJ35894
Other alias
HGNC (Hugo) TERB1
LocusID (NCBI) 283847
Atlas_Id 78420
Location 16q22.1  [Link to chromosome band 16q22]
Location_base_pair Starts at 66754976 and ends at 66801620 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TERB1   26675
Cards
Entrez_Gene (NCBI)TERB1  283847  telomere repeat binding bouquet formation protein 1
AliasesCCDC79
GeneCards (Weizmann)TERB1
Ensembl hg19 (Hinxton)ENSG00000249961 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000249961 [Gene_View]  chr16:66754976-66801620 [Contig_View]  TERB1 [Vega]
ICGC DataPortalENSG00000249961
TCGA cBioPortalTERB1
AceView (NCBI)TERB1
Genatlas (Paris)TERB1
WikiGenes283847
SOURCE (Princeton)TERB1
Genetics Home Reference (NIH)TERB1
Genomic and cartography
GoldenPath hg38 (UCSC)TERB1  -     chr16:66754976-66801620 -  16q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TERB1  -     16q22.1   [Description]    (hg19-Feb_2009)
EnsemblTERB1 - 16q22.1 [CytoView hg19]  TERB1 - 16q22.1 [CytoView hg38]
Mapping of homologs : NCBITERB1 [Mapview hg19]  TERB1 [Mapview hg38]
OMIM617332   
Gene and transcription
Genbank (Entrez)AK093213 BC126109
RefSeq transcript (Entrez)NM_001136505 NM_173616
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TERB1
Cluster EST : UnigeneHs.376505 [ NCBI ]
CGAP (NCI)Hs.376505
Alternative Splicing GalleryENSG00000249961
Gene ExpressionTERB1 [ NCBI-GEO ]   TERB1 [ EBI - ARRAY_EXPRESS ]   TERB1 [ SEEK ]   TERB1 [ MEM ]
Gene Expression Viewer (FireBrowse)TERB1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)283847
GTEX Portal (Tissue expression)TERB1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NA31   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NA31  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NA31
Splice isoforms : SwissVarQ8NA31
PhosPhoSitePlusQ8NA31
Domains : Interpro (EBI)ARM-like    ARM-type_fold    Homeobox-like    SANT/Myb   
Domain families : Pfam (Sanger)Myb_DNA-binding (PF00249)   
Domain families : Pfam (NCBI)pfam00249   
Domain families : Smart (EMBL)SANT (SM00717)  
Conserved Domain (NCBI)TERB1
DMDM Disease mutations283847
Blocks (Seattle)TERB1
SuperfamilyQ8NA31
Human Protein AtlasENSG00000249961
Peptide AtlasQ8NA31
HPRD08197
IPIIPI00884906   IPI00943328   IPI00807689   IPI01011251   
Protein Interaction databases
DIP (DOE-UCLA)Q8NA31
IntAct (EBI)Q8NA31
FunCoupENSG00000249961
BioGRIDTERB1
STRING (EMBL)TERB1
ZODIACTERB1
Ontologies - Pathways
QuickGOQ8NA31
Ontology : AmiGOchromosome, telomeric region  nuclear chromosome, telomeric region  DNA binding  nuclear inner membrane  synapsis  meiotic telomere clustering  shelterin complex  meiotic attachment of telomere to nuclear envelope  
Ontology : EGO-EBIchromosome, telomeric region  nuclear chromosome, telomeric region  DNA binding  nuclear inner membrane  synapsis  meiotic telomere clustering  shelterin complex  meiotic attachment of telomere to nuclear envelope  
NDEx NetworkTERB1
Atlas of Cancer Signalling NetworkTERB1
Wikipedia pathwaysTERB1
Orthology - Evolution
OrthoDB283847
GeneTree (enSembl)ENSG00000249961
Phylogenetic Trees/Animal Genes : TreeFamTERB1
HOVERGENQ8NA31
HOGENOMQ8NA31
Homologs : HomoloGeneTERB1
Homology/Alignments : Family Browser (UCSC)TERB1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTERB1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TERB1
dbVarTERB1
ClinVarTERB1
1000_GenomesTERB1 
Exome Variant ServerTERB1
ExAC (Exome Aggregation Consortium)TERB1 (select the gene name)
Genetic variants : HAPMAP283847
Genomic Variants (DGV)TERB1 [DGVbeta]
DECIPHERTERB1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTERB1 
Mutations
ICGC Data PortalTERB1 
TCGA Data PortalTERB1 
Broad Tumor PortalTERB1
OASIS PortalTERB1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDTERB1
BioMutasearch TERB1
DgiDB (Drug Gene Interaction Database)TERB1
DoCM (Curated mutations)TERB1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TERB1 (select a term)
intoGenTERB1
Cancer3DTERB1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617332   
Orphanet
MedgenTERB1
Genetic Testing Registry TERB1
NextProtQ8NA31 [Medical]
TSGene283847
GENETestsTERB1
Target ValidationTERB1
Huge Navigator TERB1 [HugePedia]
snp3D : Map Gene to Disease283847
BioCentury BCIQTERB1
ClinGenTERB1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD283847
Chemical/Pharm GKB GenePA162381709
Clinical trialTERB1
Miscellaneous
canSAR (ICR)TERB1 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTERB1
EVEXTERB1
GoPubMedTERB1
iHOPTERB1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:45:15 CEST 2017

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