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TERB2 (telomere repeat binding bouquet formation protein 2)

Identity

Alias (NCBI)C15orf43
HGNC (Hugo) TERB2
HGNC Alias symbMGC33951
HGNC Previous nameC15orf43
HGNC Previous namechromosome 15 open reading frame 43
LocusID (NCBI) 145645
Atlas_Id 78361
Location 15q21.1  [Link to chromosome band 15q21]
Location_base_pair Starts at 44956687 and ends at 44979228 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TERB2   28520
Cards
Entrez_Gene (NCBI)TERB2    telomere repeat binding bouquet formation protein 2
AliasesC15orf43
GeneCards (Weizmann)TERB2
Ensembl hg19 (Hinxton)ENSG00000167014 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000167014 [Gene_View]  ENSG00000167014 [Sequence]  chr15:44956687-44979228 [Contig_View]  TERB2 [Vega]
ICGC DataPortalENSG00000167014
TCGA cBioPortalTERB2
AceView (NCBI)TERB2
Genatlas (Paris)TERB2
SOURCE (Princeton)TERB2
Genetics Home Reference (NIH)TERB2
Genomic and cartography
GoldenPath hg38 (UCSC)TERB2  -     chr15:44956687-44979228 +  15q21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TERB2  -     15q21.1   [Description]    (hg19-Feb_2009)
GoldenPathTERB2 - 15q21.1 [CytoView hg19]  TERB2 - 15q21.1 [CytoView hg38]
ImmunoBaseENSG00000167014
Genome Data Viewer NCBITERB2 [Mapview hg19]  
OMIM617131   
Gene and transcription
Genbank (Entrez)BC029537
RefSeq transcript (Entrez)NM_152448
Consensus coding sequences : CCDS (NCBI)TERB2
Gene ExpressionTERB2 [ NCBI-GEO ]   TERB2 [ EBI - ARRAY_EXPRESS ]   TERB2 [ SEEK ]   TERB2 [ MEM ]
Gene Expression Viewer (FireBrowse)TERB2 [ Firebrowse - Broad ]
GenevisibleExpression of TERB2 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)145645
GTEX Portal (Tissue expression)TERB2
Human Protein AtlasENSG00000167014-TERB2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NHR7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NHR7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NHR7
PhosPhoSitePlusQ8NHR7
Domains : Interpro (EBI)TERB2   
Domain families : Pfam (Sanger)TERB2 (PF15101)   
Domain families : Pfam (NCBI)pfam15101   
Conserved Domain (NCBI)TERB2
PDB (RSDB)6GNX    6GNY    6J07    6J08   
PDB Europe6GNX    6GNY    6J07    6J08   
PDB (PDBSum)6GNX    6GNY    6J07    6J08   
PDB (IMB)6GNX    6GNY    6J07    6J08   
Structural Biology KnowledgeBase6GNX    6GNY    6J07    6J08   
SCOP (Structural Classification of Proteins)6GNX    6GNY    6J07    6J08   
CATH (Classification of proteins structures)6GNX    6GNY    6J07    6J08   
SuperfamilyQ8NHR7
AlphaFold pdb e-kbQ8NHR7   
Human Protein Atlas [tissue]ENSG00000167014-TERB2 [tissue]
HPRD17528
Protein Interaction databases
DIP (DOE-UCLA)Q8NHR7
IntAct (EBI)Q8NHR7
BioGRIDTERB2
STRING (EMBL)TERB2
ZODIACTERB2
Ontologies - Pathways
QuickGOQ8NHR7
Ontology : AmiGOchromosome, telomeric region  protein binding  nuclear inner membrane  nuclear inner membrane  homologous chromosome pairing at meiosis  homologous chromosome pairing at meiosis  meiotic telomere clustering  meiotic attachment of telomere to nuclear envelope  meiotic attachment of telomere to nuclear envelope  
Ontology : EGO-EBIchromosome, telomeric region  protein binding  nuclear inner membrane  nuclear inner membrane  homologous chromosome pairing at meiosis  homologous chromosome pairing at meiosis  meiotic telomere clustering  meiotic attachment of telomere to nuclear envelope  meiotic attachment of telomere to nuclear envelope  
NDEx NetworkTERB2
Atlas of Cancer Signalling NetworkTERB2
Wikipedia pathwaysTERB2
Orthology - Evolution
OrthoDB145645
GeneTree (enSembl)ENSG00000167014
Phylogenetic Trees/Animal Genes : TreeFamTERB2
Homologs : HomoloGeneTERB2
Homology/Alignments : Family Browser (UCSC)TERB2
Gene fusions - Rearrangements
Fusion : QuiverTERB2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTERB2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TERB2
dbVarTERB2
ClinVarTERB2
MonarchTERB2
1000_GenomesTERB2 
Exome Variant ServerTERB2
GNOMAD BrowserENSG00000167014
Varsome BrowserTERB2
ACMGTERB2 variants
VarityQ8NHR7
Genomic Variants (DGV)TERB2 [DGVbeta]
DECIPHERTERB2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTERB2 
Mutations
ICGC Data PortalTERB2 
TCGA Data PortalTERB2 
Broad Tumor PortalTERB2
OASIS PortalTERB2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTERB2  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTERB2
Mutations and Diseases : HGMDTERB2
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTERB2
DgiDB (Drug Gene Interaction Database)TERB2
DoCM (Curated mutations)TERB2
CIViC (Clinical Interpretations of Variants in Cancer)TERB2
Cancer3DTERB2
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617131   
Orphanet
DisGeNETTERB2
MedgenTERB2
Genetic Testing Registry TERB2
NextProtQ8NHR7 [Medical]
GENETestsTERB2
Target ValidationTERB2
Huge Navigator TERB2 [HugePedia]
ClinGenTERB2
Clinical trials, drugs, therapy
MyCancerGenomeTERB2
Protein Interactions : CTDTERB2
Pharm GKB GenePA143485393
PharosQ8NHR7
Clinical trialTERB2
Miscellaneous
canSAR (ICR)TERB2
HarmonizomeTERB2
DataMed IndexTERB2
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTERB2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:25:13 CEST 2021

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