Atlas of Genetics and Cytogenetics in Oncology and Haematology


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TERC (telomerase RNA component)

Identity

Alias_symbol (synonym)TR
hTR
TRC3
SCARNA19
Other aliasDKCA1
PFBMFT2
HGNC (Hugo) TERC
LocusID (NCBI) 7012
Atlas_Id 255
Location 3q26.2  [Link to chromosome band 3q26]
Location_base_pair Starts at 169764610 and ends at 169765060 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 2 ]
  Uterus: Carcinoma of the cervix
Head and Neck: Oral squamous cell carcinoma


Other Cancer prone implicated (Data extracted from papers in the Atlas) [ 1 ]
  Dyskeratosis congenita (DKC)


External links

Nomenclature
HGNC (Hugo)TERC   11727
LRG (Locus Reference Genomic)LRG_347
Cards
Entrez_Gene (NCBI)TERC  7012  telomerase RNA component
AliasesDKCA1; PFBMFT2; SCARNA19; TR; 
TRC3; hTR
GeneCards (Weizmann)TERC
Ensembl hg19 (Hinxton)ENSG00000270141 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000270141 [Gene_View]  chr3:169764610-169765060 [Contig_View]  TERC [Vega]
ICGC DataPortalENSG00000270141
TCGA cBioPortalTERC
AceView (NCBI)TERC
Genatlas (Paris)TERC
WikiGenes7012
SOURCE (Princeton)TERC
Genetics Home Reference (NIH)TERC
Genomic and cartography
GoldenPath hg38 (UCSC)TERC  -     chr3:169764610-169765060 -  3q26.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TERC  -     3q26.2   [Description]    (hg19-Feb_2009)
EnsemblTERC - 3q26.2 [CytoView hg19]  TERC - 3q26.2 [CytoView hg38]
Mapping of homologs : NCBITERC [Mapview hg19]  TERC [Mapview hg38]
OMIM127550   602322   614743   
Gene and transcription
Genbank (Entrez)BC128029
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TERC
Cluster EST : UnigeneHs.436182 [ NCBI ]
CGAP (NCI)Hs.436182
Alternative Splicing GalleryENSG00000270141
Gene ExpressionTERC [ NCBI-GEO ]   TERC [ EBI - ARRAY_EXPRESS ]   TERC [ SEEK ]   TERC [ MEM ]
Gene Expression Viewer (FireBrowse)TERC [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)7012
GTEX Portal (Tissue expression)TERC
Human Protein AtlasENSG00000270141-TERC [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TERC
DMDM Disease mutations7012
Blocks (Seattle)TERC
Human Protein Atlas [tissue]ENSG00000270141-TERC [tissue]
Protein Interaction databases
FunCoupENSG00000270141
BioGRIDTERC
STRING (EMBL)TERC
ZODIACTERC
Ontologies - Pathways
Huge Navigator TERC [HugePedia]
snp3D : Map Gene to Disease7012
BioCentury BCIQTERC
ClinGenTERC
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD7012
Chemical/Pharm GKB GenePA36444
Clinical trialTERC
Miscellaneous
canSAR (ICR)TERC (select the gene name)
Probes
Litterature
PubMed156 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTERC
EVEXTERC
GoPubMedTERC
iHOPTERC
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 13:14:12 CET 2017

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