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TES (testin LIM domain protein)

Identity

Alias_namestestis derived transcript (3 LIM domains)
Alias_symbol (synonym)DKFZP586B2022
TESS-2
TESTIN
Other aliasTESS
HGNC (Hugo) TES
LocusID (NCBI) 26136
Atlas_Id 42524
Location 7q31.2  [Link to chromosome band 7q31]
Location_base_pair Starts at 116210493 and ends at 116258783 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
MET (7q31.2) / TES (7q31.2)SLC12A6 (15q14) / TES (7q31.2)TES (7q31.2) / CAV1 (7q31.2)
TES (7q31.2) / HNRNPU (1q44)TES (7q31.2) / MBD2 (18q21.2)TES (7q31.2) / SLC12A6 (15q14)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TES   14620
Cards
Entrez_Gene (NCBI)TES  26136  testin LIM domain protein
AliasesTESS; TESS-2
GeneCards (Weizmann)TES
Ensembl hg19 (Hinxton)ENSG00000135269 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000135269 [Gene_View]  chr7:116210493-116258783 [Contig_View]  TES [Vega]
ICGC DataPortalENSG00000135269
TCGA cBioPortalTES
AceView (NCBI)TES
Genatlas (Paris)TES
WikiGenes26136
SOURCE (Princeton)TES
Genetics Home Reference (NIH)TES
Genomic and cartography
GoldenPath hg38 (UCSC)TES  -     chr7:116210493-116258783 +  7q31.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TES  -     7q31.2   [Description]    (hg19-Feb_2009)
EnsemblTES - 7q31.2 [CytoView hg19]  TES - 7q31.2 [CytoView hg38]
Mapping of homologs : NCBITES [Mapview hg19]  TES [Mapview hg38]
OMIM606085   
Gene and transcription
Genbank (Entrez)AF147329 AF245356 AF245357 AJ250865 AK021575
RefSeq transcript (Entrez)NM_015641 NM_152829
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TES
Cluster EST : UnigeneHs.664957 [ NCBI ]
CGAP (NCI)Hs.664957
Alternative Splicing GalleryENSG00000135269
Gene ExpressionTES [ NCBI-GEO ]   TES [ EBI - ARRAY_EXPRESS ]   TES [ SEEK ]   TES [ MEM ]
Gene Expression Viewer (FireBrowse)TES [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)26136
GTEX Portal (Tissue expression)TES
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UGI8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UGI8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UGI8
Splice isoforms : SwissVarQ9UGI8
PhosPhoSitePlusQ9UGI8
Domaine pattern : Prosite (Expaxy)LIM_DOMAIN_1 (PS00478)    LIM_DOMAIN_2 (PS50023)    PET (PS51303)   
Domains : Interpro (EBI)PET_domain    PET_testin    Testin    Znf_LIM   
Domain families : Pfam (Sanger)LIM (PF00412)    PET (PF06297)   
Domain families : Pfam (NCBI)pfam00412    pfam06297   
Domain families : Smart (EMBL)LIM (SM00132)  
Conserved Domain (NCBI)TES
DMDM Disease mutations26136
Blocks (Seattle)TES
PDB (SRS)2IYB    2XQN   
PDB (PDBSum)2IYB    2XQN   
PDB (IMB)2IYB    2XQN   
PDB (RSDB)2IYB    2XQN   
Structural Biology KnowledgeBase2IYB    2XQN   
SCOP (Structural Classification of Proteins)2IYB    2XQN   
CATH (Classification of proteins structures)2IYB    2XQN   
SuperfamilyQ9UGI8
Human Protein AtlasENSG00000135269
Peptide AtlasQ9UGI8
HPRD05833
IPIIPI00024097   IPI00216425   IPI01011670   IPI01015717   IPI00743368   IPI00878833   IPI00926201   IPI00945105   
Protein Interaction databases
DIP (DOE-UCLA)Q9UGI8
IntAct (EBI)Q9UGI8
FunCoupENSG00000135269
BioGRIDTES
STRING (EMBL)TES
ZODIACTES
Ontologies - Pathways
QuickGOQ9UGI8
Ontology : AmiGORNA binding  protein binding  nucleus  cytosol  plasma membrane  focal adhesion  zinc ion binding  negative regulation of cell proliferation  cell junction  protein complex  cadherin binding  
Ontology : EGO-EBIRNA binding  protein binding  nucleus  cytosol  plasma membrane  focal adhesion  zinc ion binding  negative regulation of cell proliferation  cell junction  protein complex  cadherin binding  
NDEx NetworkTES
Atlas of Cancer Signalling NetworkTES
Wikipedia pathwaysTES
Orthology - Evolution
OrthoDB26136
GeneTree (enSembl)ENSG00000135269
Phylogenetic Trees/Animal Genes : TreeFamTES
HOVERGENQ9UGI8
HOGENOMQ9UGI8
Homologs : HomoloGeneTES
Homology/Alignments : Family Browser (UCSC)TES
Gene fusions - Rearrangements
Fusion : MitelmanTES/HNRNPU [7q31.2/1q44]  
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTES [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TES
dbVarTES
ClinVarTES
1000_GenomesTES 
Exome Variant ServerTES
ExAC (Exome Aggregation Consortium)TES (select the gene name)
Genetic variants : HAPMAP26136
Genomic Variants (DGV)TES [DGVbeta]
DECIPHERTES [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTES 
Mutations
ICGC Data PortalTES 
TCGA Data PortalTES 
Broad Tumor PortalTES
OASIS PortalTES [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTES  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTES
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TES
DgiDB (Drug Gene Interaction Database)TES
DoCM (Curated mutations)TES (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TES (select a term)
intoGenTES
Cancer3DTES(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606085   
Orphanet
MedgenTES
Genetic Testing Registry TES
NextProtQ9UGI8 [Medical]
TSGene26136
GENETestsTES
Target ValidationTES
Huge Navigator TES [HugePedia]
snp3D : Map Gene to Disease26136
BioCentury BCIQTES
ClinGenTES
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD26136
Chemical/Pharm GKB GenePA37906
Clinical trialTES
Miscellaneous
canSAR (ICR)TES (select the gene name)
Probes
Litterature
PubMed55 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTES
EVEXTES
GoPubMedTES
iHOPTES
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:59:04 CEST 2017

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