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TESMIN (testis expressed metallothionein like protein)

Identity

Alias_namesMTL5
metallothionein-like 5, testis-specific (tesmin)
Alias_symbol (synonym)CXCDC2
Other aliasMTLT
HGNC (Hugo) TESMIN
LocusID (NCBI) 9633
Atlas_Id 78442
Location 11q13.3  [Link to chromosome band 11q13]
Location_base_pair Starts at 68736132 and ends at 68751520 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TESMIN   7446
Cards
Entrez_Gene (NCBI)TESMIN  9633  testis expressed metallothionein like protein
AliasesCXCDC2; MTL5; MTLT
GeneCards (Weizmann)TESMIN
Ensembl hg19 (Hinxton)ENSG00000132749 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000132749 [Gene_View]  chr11:68736132-68751520 [Contig_View]  TESMIN [Vega]
ICGC DataPortalENSG00000132749
TCGA cBioPortalTESMIN
AceView (NCBI)TESMIN
Genatlas (Paris)TESMIN
WikiGenes9633
SOURCE (Princeton)TESMIN
Genetics Home Reference (NIH)TESMIN
Genomic and cartography
GoldenPath hg38 (UCSC)TESMIN  -     chr11:68736132-68751520 -  11q13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TESMIN  -     11q13.3   [Description]    (hg19-Feb_2009)
EnsemblTESMIN - 11q13.3 [CytoView hg19]  TESMIN - 11q13.3 [CytoView hg38]
Mapping of homologs : NCBITESMIN [Mapview hg19]  TESMIN [Mapview hg38]
OMIM604374   
Gene and transcription
Genbank (Entrez)AK074817 AK128308 AK292358 AW293246 BC027593
RefSeq transcript (Entrez)NM_001039656 NM_004923
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TESMIN
Cluster EST : UnigeneHs.145932 [ NCBI ]
CGAP (NCI)Hs.145932
Alternative Splicing GalleryENSG00000132749
Gene ExpressionTESMIN [ NCBI-GEO ]   TESMIN [ EBI - ARRAY_EXPRESS ]   TESMIN [ SEEK ]   TESMIN [ MEM ]
Gene Expression Viewer (FireBrowse)TESMIN [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9633
GTEX Portal (Tissue expression)TESMIN
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y4I5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y4I5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y4I5
Splice isoforms : SwissVarQ9Y4I5
PhosPhoSitePlusQ9Y4I5
Domaine pattern : Prosite (Expaxy)CRC (PS51634)   
Domains : Interpro (EBI)CRC    Lin-54_fam    Tesmin/TSO1-like_CXC   
Domain families : Pfam (Sanger)TCR (PF03638)   
Domain families : Pfam (NCBI)pfam03638   
Domain families : Smart (EMBL)CXC (SM01114)  
Conserved Domain (NCBI)TESMIN
DMDM Disease mutations9633
Blocks (Seattle)TESMIN
SuperfamilyQ9Y4I5
Human Protein AtlasENSG00000132749
Peptide AtlasQ9Y4I5
HPRD09186
IPIIPI00007395   IPI00738914   IPI00903174   IPI00448599   IPI00979743   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y4I5
IntAct (EBI)Q9Y4I5
FunCoupENSG00000132749
BioGRIDTESMIN
STRING (EMBL)TESMIN
ZODIACTESMIN
Ontologies - Pathways
QuickGOQ9Y4I5
Ontology : AmiGOnucleus  cytoplasm  cellular metal ion homeostasis  multicellular organism development  spermatogenesis  response to metal ion  cell differentiation  metal ion binding  
Ontology : EGO-EBInucleus  cytoplasm  cellular metal ion homeostasis  multicellular organism development  spermatogenesis  response to metal ion  cell differentiation  metal ion binding  
NDEx NetworkTESMIN
Atlas of Cancer Signalling NetworkTESMIN
Wikipedia pathwaysTESMIN
Orthology - Evolution
OrthoDB9633
GeneTree (enSembl)ENSG00000132749
Phylogenetic Trees/Animal Genes : TreeFamTESMIN
HOVERGENQ9Y4I5
HOGENOMQ9Y4I5
Homologs : HomoloGeneTESMIN
Homology/Alignments : Family Browser (UCSC)TESMIN
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTESMIN [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TESMIN
dbVarTESMIN
ClinVarTESMIN
1000_GenomesTESMIN 
Exome Variant ServerTESMIN
ExAC (Exome Aggregation Consortium)TESMIN (select the gene name)
Genetic variants : HAPMAP9633
Genomic Variants (DGV)TESMIN [DGVbeta]
DECIPHERTESMIN [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTESMIN 
Mutations
ICGC Data PortalTESMIN 
TCGA Data PortalTESMIN 
Broad Tumor PortalTESMIN
OASIS PortalTESMIN [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDTESMIN
BioMutasearch TESMIN
DgiDB (Drug Gene Interaction Database)TESMIN
DoCM (Curated mutations)TESMIN (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TESMIN (select a term)
intoGenTESMIN
Cancer3DTESMIN(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604374   
Orphanet
MedgenTESMIN
Genetic Testing Registry TESMIN
NextProtQ9Y4I5 [Medical]
TSGene9633
GENETestsTESMIN
Huge Navigator TESMIN [HugePedia]
snp3D : Map Gene to Disease9633
BioCentury BCIQTESMIN
ClinGenTESMIN
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9633
Chemical/Pharm GKB GenePA31249
Clinical trialTESMIN
Miscellaneous
canSAR (ICR)TESMIN (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTESMIN
EVEXTESMIN
GoPubMedTESMIN
iHOPTESMIN
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 11:57:46 CEST 2017

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