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TESPA1 (thymocyte expressed, positive selection associated 1)

Identity

Alias_namesKIAA0748
KIAA0748
Other aliasHSPC257
HGNC (Hugo) TESPA1
LocusID (NCBI) 9840
Atlas_Id 74626
Location 12q13.2  [Link to chromosome band 12q13]
Location_base_pair Starts at 54948303 and ends at 54981838 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TESPA1   29109
Cards
Entrez_Gene (NCBI)TESPA1  9840  thymocyte expressed, positive selection associated 1
AliasesHSPC257; KIAA0748
GeneCards (Weizmann)TESPA1
Ensembl hg19 (Hinxton)ENSG00000135426 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000135426 [Gene_View]  chr12:54948303-54981838 [Contig_View]  TESPA1 [Vega]
ICGC DataPortalENSG00000135426
TCGA cBioPortalTESPA1
AceView (NCBI)TESPA1
Genatlas (Paris)TESPA1
WikiGenes9840
SOURCE (Princeton)TESPA1
Genetics Home Reference (NIH)TESPA1
Genomic and cartography
GoldenPath hg38 (UCSC)TESPA1  -     chr12:54948303-54981838 -  12q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TESPA1  -     12q13.2   [Description]    (hg19-Feb_2009)
EnsemblTESPA1 - 12q13.2 [CytoView hg19]  TESPA1 - 12q13.2 [CytoView hg38]
Mapping of homologs : NCBITESPA1 [Mapview hg19]  TESPA1 [Mapview hg38]
OMIM615664   
Gene and transcription
Genbank (Entrez)AB018291 AF161375 AK295026 AK298405 AK303223
RefSeq transcript (Entrez)NM_001098815 NM_001136030 NM_001261844 NM_001351148 NM_001351149 NM_001351150 NM_001351151 NM_001351152 NM_001351153 NM_001351154 NM_001351155 NM_014796
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TESPA1
Cluster EST : UnigeneHs.33187 [ NCBI ]
CGAP (NCI)Hs.33187
Alternative Splicing GalleryENSG00000135426
Gene ExpressionTESPA1 [ NCBI-GEO ]   TESPA1 [ EBI - ARRAY_EXPRESS ]   TESPA1 [ SEEK ]   TESPA1 [ MEM ]
Gene Expression Viewer (FireBrowse)TESPA1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9840
GTEX Portal (Tissue expression)TESPA1
Protein : pattern, domain, 3D structure
UniProt/SwissProtA2RU30   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA2RU30  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA2RU30
Splice isoforms : SwissVarA2RU30
PhosPhoSitePlusA2RU30
Domains : Interpro (EBI)IP3R-bd    TESPA1   
Domain families : Pfam (Sanger)KRAP_IP3R_bind (PF14722)   
Domain families : Pfam (NCBI)pfam14722   
Domain families : Smart (EMBL)KRAP_IP3R_bind (SM01257)  
Conserved Domain (NCBI)TESPA1
DMDM Disease mutations9840
Blocks (Seattle)TESPA1
SuperfamilyA2RU30
Human Protein AtlasENSG00000135426
Peptide AtlasA2RU30
IPIIPI00879386   IPI00853247   IPI00878268   IPI00740628   IPI00979046   IPI00791150   IPI00982298   IPI00793106   IPI01008854   IPI00980253   IPI00978437   IPI00975693   IPI00982890   
Protein Interaction databases
DIP (DOE-UCLA)A2RU30
IntAct (EBI)A2RU30
FunCoupENSG00000135426
BioGRIDTESPA1
STRING (EMBL)TESPA1
ZODIACTESPA1
Ontologies - Pathways
QuickGOA2RU30
Ontology : AmiGOreceptor binding  cytoplasm  cytoplasm  endoplasmic reticulum membrane  COP9 signalosome  COP9 signalosome assembly  positive regulation of T cell differentiation in thymus  positive regulation of T cell receptor signaling pathway  positive regulation of T cell receptor signaling pathway  
Ontology : EGO-EBIreceptor binding  cytoplasm  cytoplasm  endoplasmic reticulum membrane  COP9 signalosome  COP9 signalosome assembly  positive regulation of T cell differentiation in thymus  positive regulation of T cell receptor signaling pathway  positive regulation of T cell receptor signaling pathway  
NDEx NetworkTESPA1
Atlas of Cancer Signalling NetworkTESPA1
Wikipedia pathwaysTESPA1
Orthology - Evolution
OrthoDB9840
GeneTree (enSembl)ENSG00000135426
Phylogenetic Trees/Animal Genes : TreeFamTESPA1
HOVERGENA2RU30
HOGENOMA2RU30
Homologs : HomoloGeneTESPA1
Homology/Alignments : Family Browser (UCSC)TESPA1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTESPA1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TESPA1
dbVarTESPA1
ClinVarTESPA1
1000_GenomesTESPA1 
Exome Variant ServerTESPA1
ExAC (Exome Aggregation Consortium)TESPA1 (select the gene name)
Genetic variants : HAPMAP9840
Genomic Variants (DGV)TESPA1 [DGVbeta]
DECIPHERTESPA1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTESPA1 
Mutations
ICGC Data PortalTESPA1 
TCGA Data PortalTESPA1 
Broad Tumor PortalTESPA1
OASIS PortalTESPA1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDTESPA1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TESPA1
DgiDB (Drug Gene Interaction Database)TESPA1
DoCM (Curated mutations)TESPA1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TESPA1 (select a term)
intoGenTESPA1
Cancer3DTESPA1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615664   
Orphanet
MedgenTESPA1
Genetic Testing Registry TESPA1
NextProtA2RU30 [Medical]
TSGene9840
GENETestsTESPA1
Target ValidationTESPA1
Huge Navigator TESPA1 [HugePedia]
snp3D : Map Gene to Disease9840
BioCentury BCIQTESPA1
ClinGenTESPA1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9840
Chemical/Pharm GKB GenePA128394561
Clinical trialTESPA1
Miscellaneous
canSAR (ICR)TESPA1 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTESPA1
EVEXTESPA1
GoPubMedTESPA1
iHOPTESPA1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:45:16 CEST 2017

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