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TET2 (tet methylcytosine dioxygenase 2)

Identity

Other namesKIAA1546
MDS
HGNC (Hugo) TET2
LocusID (NCBI) 54790
Location 4q24
Location_base_pair Starts at 106067842 and ends at 106200960 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)TET2   25941
Cards
Entrez_Gene (NCBI)TET2  54790  tet methylcytosine dioxygenase 2
GeneCards (Weizmann)TET2
Ensembl (Hinxton)ENSG00000168769 [Gene_View]  chr4:106067842-106200960 [Contig_View]  TET2 [Vega]
AceView (NCBI)TET2
Genatlas (Paris)TET2
WikiGenes54790
SOURCE (Princeton)NM_001127208 NM_017628
Genomic and cartography
GoldenPath (UCSC)TET2  -  4q24   chr4:106067842-106200960 +  4q24   [Description]    (hg19-Feb_2009)
EnsemblTET2 - 4q24 [CytoView]
Mapping of homologs : NCBITET2 [Mapview]
OMIM612839   614286   614296   
Gene and transcription
Genbank (Entrez)AB046766 AB075496 AI084057 AK000039 AK027819
RefSeq transcript (Entrez)NM_001127208 NM_017628
RefSeq genomic (Entrez)AC_000136 NC_000004 NC_018915 NG_028191 NT_016354 NW_001838915 NW_004929320
Consensus coding sequences : CCDS (NCBI)TET2
Cluster EST : UnigeneHs.706276 [ NCBI ]
CGAP (NCI)Hs.706276
Alternative Splicing : Fast-db (Paris)GSHG0022765
Alternative Splicing GalleryENSG00000168769
Gene ExpressionTET2 [ NCBI-GEO ]     TET2 [ SEEK ]   TET2 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6N021 (Uniprot)
NextProtQ6N021  [Medical]
With graphics : InterProQ6N021
Splice isoforms : SwissVarQ6N021 (Swissvar)
Domains : Interpro (EBI)2OGFeDO_nucleic_acid_mod   
Related proteins : CluSTrQ6N021
Domain families : Pfam (Sanger)Tet_JBP (PF12851)   
Domain families : Pfam (NCBI)pfam12851   
DMDM Disease mutations54790
Blocks (Seattle)Q6N021
Human Protein AtlasENSG00000168769
Peptide AtlasQ6N021
HPRD07876
IPIIPI00175151   IPI00026533   IPI00654641   IPI00794882   IPI00968180   IPI00963989   
Protein Interaction databases
DIP (DOE-UCLA)Q6N021
IntAct (EBI)Q6N021
FunCoupENSG00000168769
BioGRIDTET2
InParanoidQ6N021
Interologous Interaction database Q6N021
IntegromeDBTET2
STRING (EMBL)TET2
Ontologies - Pathways
Ontology : AmiGOkidney development  protein binding  protein O-linked glycosylation  protein O-linked glycosylation  cell cycle  post-embryonic development  myeloid cell differentiation  positive regulation of transcription from RNA polymerase II promoter  metal ion binding  methylcytosine dioxygenase activity  methylcytosine dioxygenase activity  histone H3-K4 trimethylation  
Ontology : EGO-EBIkidney development  protein binding  protein O-linked glycosylation  protein O-linked glycosylation  cell cycle  post-embryonic development  myeloid cell differentiation  positive regulation of transcription from RNA polymerase II promoter  metal ion binding  methylcytosine dioxygenase activity  methylcytosine dioxygenase activity  histone H3-K4 trimethylation  
REACTOMETET2
Protein Interaction DatabaseTET2
Wikipedia pathwaysTET2
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)TET2
SNP (GeneSNP Utah)TET2
SNP : HGBaseTET2
Genetic variants : HAPMAPTET2
1000_GenomesTET2 
ICGC programENSG00000168769 
Cancer Gene: CensusTET2 
Somatic Mutations in Cancer : COSMICTET2 
CONAN: Copy Number AnalysisTET2 
Mutations and Diseases : HGMDTET2
OMIM612839    614286    614296   
GENETestsTET2
Disease Genetic AssociationTET2
Huge Navigator TET2 [HugePedia]  TET2 [HugeCancerGEM]
Genomic VariantsTET2  TET2 [DGVbeta]
Exome VariantTET2
dbVarTET2
ClinVarTET2
snp3D : Map Gene to Disease54790
General knowledge
Homologs : HomoloGeneTET2
Homology/Alignments : Family Browser (UCSC)TET2
Phylogenetic Trees/Animal Genes : TreeFamTET2
Chemical/Protein Interactions : CTD54790
Chemical/Pharm GKB GenePA162405634
Drug Sensitivity TET2
Clinical trialTET2
Cancer Resource (Charite)ENSG00000168769
Other databases
Probes
Litterature
PubMed103 Pubmed reference(s) in Entrez
CoreMineTET2
iHOPTET2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Apr 18 16:47:39 CEST 2014

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