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TEX10 (testis expressed 10)

Identity

Alias_namestestis expressed gene 10
testis expressed sequence 10
Alias_symbol (synonym)FLJ20287
bA208F1.2
Ipi1
Other alias
HGNC (Hugo) TEX10
LocusID (NCBI) 54881
Atlas_Id 53512
Location 9q31.1  [Link to chromosome band 9q31]
Location_base_pair Starts at 100302075 and ends at 100352571 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
MAX (14q23.3) / TEX10 (9q31.1)TEX10 (9q31.1) / WSB1 (17q11.1)TEX10 (9q31.1) / XPA (9q22.33)
MAX 14q23.3 / TEX10 9q31.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TEX10   25988
Cards
Entrez_Gene (NCBI)TEX10  54881  testis expressed 10
AliasesIpi1; bA208F1.2
GeneCards (Weizmann)TEX10
Ensembl hg19 (Hinxton)ENSG00000136891 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000136891 [Gene_View]  chr9:100302075-100352571 [Contig_View]  TEX10 [Vega]
ICGC DataPortalENSG00000136891
TCGA cBioPortalTEX10
AceView (NCBI)TEX10
Genatlas (Paris)TEX10
WikiGenes54881
SOURCE (Princeton)TEX10
Genetics Home Reference (NIH)TEX10
Genomic and cartography
GoldenPath hg38 (UCSC)TEX10  -     chr9:100302075-100352571 -  9q31.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TEX10  -     9q31.1   [Description]    (hg19-Feb_2009)
EnsemblTEX10 - 9q31.1 [CytoView hg19]  TEX10 - 9q31.1 [CytoView hg38]
Mapping of homologs : NCBITEX10 [Mapview hg19]  TEX10 [Mapview hg38]
OMIM616717   
Gene and transcription
Genbank (Entrez)AA436854 AB060968 AJ420436 AK000294 AK055719
RefSeq transcript (Entrez)NM_001161584 NM_017746
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TEX10
Cluster EST : UnigeneHs.494648 [ NCBI ]
CGAP (NCI)Hs.494648
Alternative Splicing GalleryENSG00000136891
Gene ExpressionTEX10 [ NCBI-GEO ]   TEX10 [ EBI - ARRAY_EXPRESS ]   TEX10 [ SEEK ]   TEX10 [ MEM ]
Gene Expression Viewer (FireBrowse)TEX10 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54881
GTEX Portal (Tissue expression)TEX10
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NXF1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NXF1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NXF1
Splice isoforms : SwissVarQ9NXF1
PhosPhoSitePlusQ9NXF1
Domaine pattern : Prosite (Expaxy)HEAT_REPEAT (PS50077)   
Domains : Interpro (EBI)ARM-like    ARM-type_fold    HEAT_type_2    IPI1/TEX10   
Domain families : Pfam (Sanger)Ipi1_N (PF12333)   
Domain families : Pfam (NCBI)pfam12333   
Conserved Domain (NCBI)TEX10
DMDM Disease mutations54881
Blocks (Seattle)TEX10
SuperfamilyQ9NXF1
Human Protein AtlasENSG00000136891
Peptide AtlasQ9NXF1
HPRD15489
IPIIPI00549664   IPI01009529   IPI01013345   IPI00642510   IPI00979656   
Protein Interaction databases
DIP (DOE-UCLA)Q9NXF1
IntAct (EBI)Q9NXF1
FunCoupENSG00000136891
BioGRIDTEX10
STRING (EMBL)TEX10
ZODIACTEX10
Ontologies - Pathways
QuickGOQ9NXF1
Ontology : AmiGOprotein binding  nucleoplasm  nucleolus  cytoplasm  rRNA processing  integral component of membrane  nuclear membrane  MLL1 complex  Rix1 complex  
Ontology : EGO-EBIprotein binding  nucleoplasm  nucleolus  cytoplasm  rRNA processing  integral component of membrane  nuclear membrane  MLL1 complex  Rix1 complex  
NDEx NetworkTEX10
Atlas of Cancer Signalling NetworkTEX10
Wikipedia pathwaysTEX10
Orthology - Evolution
OrthoDB54881
GeneTree (enSembl)ENSG00000136891
Phylogenetic Trees/Animal Genes : TreeFamTEX10
HOVERGENQ9NXF1
HOGENOMQ9NXF1
Homologs : HomoloGeneTEX10
Homology/Alignments : Family Browser (UCSC)TEX10
Gene fusions - Rearrangements
Fusion : MitelmanMAX/TEX10 [14q23.3/9q31.1]  [t(9;14)(q31;q23)]  
Fusion : MitelmanTEX10/XPA [9q31.1/9q22.33]  [del(9)(q22)]  [del(9)(q22q31)]  
Fusion: TCGAMAX 14q23.3 TEX10 9q31.1 LUAD
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTEX10 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TEX10
dbVarTEX10
ClinVarTEX10
1000_GenomesTEX10 
Exome Variant ServerTEX10
ExAC (Exome Aggregation Consortium)TEX10 (select the gene name)
Genetic variants : HAPMAP54881
Genomic Variants (DGV)TEX10 [DGVbeta]
DECIPHERTEX10 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTEX10 
Mutations
ICGC Data PortalTEX10 
TCGA Data PortalTEX10 
Broad Tumor PortalTEX10
OASIS PortalTEX10 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTEX10  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTEX10
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TEX10
DgiDB (Drug Gene Interaction Database)TEX10
DoCM (Curated mutations)TEX10 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TEX10 (select a term)
intoGenTEX10
Cancer3DTEX10(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616717   
Orphanet
MedgenTEX10
Genetic Testing Registry TEX10
NextProtQ9NXF1 [Medical]
TSGene54881
GENETestsTEX10
Target ValidationTEX10
Huge Navigator TEX10 [HugePedia]
snp3D : Map Gene to Disease54881
BioCentury BCIQTEX10
ClinGenTEX10
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54881
Chemical/Pharm GKB GenePA134991964
Clinical trialTEX10
Miscellaneous
canSAR (ICR)TEX10 (select the gene name)
Probes
Litterature
PubMed30 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTEX10
EVEXTEX10
GoPubMedTEX10
iHOPTEX10
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 17:16:43 CEST 2017

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