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TEX11 (testis expressed 11)

Identity

Alias (NCBI)MZIP4
SPGFX2
Spo22
TGC1
TSGA3
ZIP4
ZIP4H
HGNC (Hugo) TEX11
HGNC Alias symbTSGA3
TGC1
HGNC Previous nametestis expressed sequence 11
LocusID (NCBI) 56159
Atlas_Id 74627
Location Xq13.1  [Link to chromosome band Xq13]
Location_base_pair Starts at 70528940 and ends at 70908711 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TEX11   11733
Cards
Entrez_Gene (NCBI)TEX11    testis expressed 11
AliasesMZIP4; SPGFX2; Spo22; TGC1; 
TSGA3; ZIP4; ZIP4H
GeneCards (Weizmann)TEX11
Ensembl hg19 (Hinxton)ENSG00000120498 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000120498 [Gene_View]  ENSG00000120498 [Sequence]  chrX:70528940-70908711 [Contig_View]  TEX11 [Vega]
ICGC DataPortalENSG00000120498
TCGA cBioPortalTEX11
AceView (NCBI)TEX11
Genatlas (Paris)TEX11
SOURCE (Princeton)TEX11
Genetics Home Reference (NIH)TEX11
Genomic and cartography
GoldenPath hg38 (UCSC)TEX11  -     chrX:70528940-70908711 -  Xq13.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TEX11  -     Xq13.1   [Description]    (hg19-Feb_2009)
GoldenPathTEX11 - Xq13.1 [CytoView hg19]  TEX11 - Xq13.1 [CytoView hg38]
ImmunoBaseENSG00000120498
Genome Data Viewer NCBITEX11 [Mapview hg19]  
OMIM300311   309120   
Gene and transcription
Genbank (Entrez)AF285594 AK057391 AK057523 AK292471 BC036016
RefSeq transcript (Entrez)NM_001003811 NM_031276
Consensus coding sequences : CCDS (NCBI)TEX11
Gene ExpressionTEX11 [ NCBI-GEO ]   TEX11 [ EBI - ARRAY_EXPRESS ]   TEX11 [ SEEK ]   TEX11 [ MEM ]
Gene Expression Viewer (FireBrowse)TEX11 [ Firebrowse - Broad ]
GenevisibleExpression of TEX11 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)56159
GTEX Portal (Tissue expression)TEX11
Human Protein AtlasENSG00000120498-TEX11 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IYF3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IYF3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IYF3
PhosPhoSitePlusQ8IYF3
Domains : Interpro (EBI)Spo22/ZIP4/TEX11    TEX11    TPR-like_helical_dom_sf    TPR_repeat   
Domain families : Pfam (Sanger)SPO22 (PF08631)   
Domain families : Pfam (NCBI)pfam08631   
Domain families : Smart (EMBL)TPR (SM00028)  
Conserved Domain (NCBI)TEX11
SuperfamilyQ8IYF3
AlphaFold pdb e-kbQ8IYF3   
Human Protein Atlas [tissue]ENSG00000120498-TEX11 [tissue]
HPRD02256
Protein Interaction databases
DIP (DOE-UCLA)Q8IYF3
IntAct (EBI)Q8IYF3
BioGRIDTEX11
STRING (EMBL)TEX11
ZODIACTEX11
Ontologies - Pathways
QuickGOQ8IYF3
Ontology : AmiGOresolution of meiotic recombination intermediates  synaptonemal complex  central element  protein binding  chromosome  meiotic gene conversion  male meiosis chromosome segregation  synaptonemal complex assembly  reciprocal meiotic recombination  reciprocal meiotic recombination  male gonad development  fertilization  negative regulation of apoptotic process  chiasma assembly  
Ontology : EGO-EBIresolution of meiotic recombination intermediates  synaptonemal complex  central element  protein binding  chromosome  meiotic gene conversion  male meiosis chromosome segregation  synaptonemal complex assembly  reciprocal meiotic recombination  reciprocal meiotic recombination  male gonad development  fertilization  negative regulation of apoptotic process  chiasma assembly  
NDEx NetworkTEX11
Atlas of Cancer Signalling NetworkTEX11
Wikipedia pathwaysTEX11
Orthology - Evolution
OrthoDB56159
GeneTree (enSembl)ENSG00000120498
Phylogenetic Trees/Animal Genes : TreeFamTEX11
Homologs : HomoloGeneTEX11
Homology/Alignments : Family Browser (UCSC)TEX11
Gene fusions - Rearrangements
Fusion : QuiverTEX11
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTEX11 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TEX11
dbVarTEX11
ClinVarTEX11
MonarchTEX11
1000_GenomesTEX11 
Exome Variant ServerTEX11
GNOMAD BrowserENSG00000120498
Varsome BrowserTEX11
ACMGTEX11 variants
VarityQ8IYF3
Genomic Variants (DGV)TEX11 [DGVbeta]
DECIPHERTEX11 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTEX11 
Mutations
ICGC Data PortalTEX11 
TCGA Data PortalTEX11 
Broad Tumor PortalTEX11
OASIS PortalTEX11 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTEX11  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTEX11
Mutations and Diseases : HGMDTEX11
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTEX11
DgiDB (Drug Gene Interaction Database)TEX11
DoCM (Curated mutations)TEX11
CIViC (Clinical Interpretations of Variants in Cancer)TEX11
Cancer3DTEX11
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300311    309120   
Orphanet22774   
DisGeNETTEX11
MedgenTEX11
Genetic Testing Registry TEX11
NextProtQ8IYF3 [Medical]
GENETestsTEX11
Target ValidationTEX11
Huge Navigator TEX11 [HugePedia]
ClinGenTEX11
Clinical trials, drugs, therapy
MyCancerGenomeTEX11
Protein Interactions : CTDTEX11
Pharm GKB GenePA36450
PharosQ8IYF3
Clinical trialTEX11
Miscellaneous
canSAR (ICR)TEX11
HarmonizomeTEX11
DataMed IndexTEX11
Probes
Litterature
PubMed23 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTEX11
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:25:15 CEST 2021

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