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TEX11 (testis expressed 11)

Identity

Alias_namestestis expressed sequence 11
Alias_symbol (synonym)TSGA3
TGC1
Other aliasSPGFX2
HGNC (Hugo) TEX11
LocusID (NCBI) 56159
Atlas_Id 74627
Location Xq13.1  [Link to chromosome band Xq13]
Location_base_pair Starts at 70528940 and ends at 70908717 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TEX11   11733
Cards
Entrez_Gene (NCBI)TEX11  56159  testis expressed 11
AliasesSPGFX2; TGC1; TSGA3
GeneCards (Weizmann)TEX11
Ensembl hg19 (Hinxton)ENSG00000120498 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000120498 [Gene_View]  chrX:70528940-70908717 [Contig_View]  TEX11 [Vega]
ICGC DataPortalENSG00000120498
TCGA cBioPortalTEX11
AceView (NCBI)TEX11
Genatlas (Paris)TEX11
WikiGenes56159
SOURCE (Princeton)TEX11
Genetics Home Reference (NIH)TEX11
Genomic and cartography
GoldenPath hg38 (UCSC)TEX11  -     chrX:70528940-70908717 -  Xq13.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TEX11  -     Xq13.1   [Description]    (hg19-Feb_2009)
EnsemblTEX11 - Xq13.1 [CytoView hg19]  TEX11 - Xq13.1 [CytoView hg38]
Mapping of homologs : NCBITEX11 [Mapview hg19]  TEX11 [Mapview hg38]
OMIM300311   309120   
Gene and transcription
Genbank (Entrez)AF285594 AK057391 AK057523 AK292471 BC036016
RefSeq transcript (Entrez)NM_001003811 NM_031276
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TEX11
Cluster EST : UnigeneHs.121776 [ NCBI ]
CGAP (NCI)Hs.121776
Alternative Splicing GalleryENSG00000120498
Gene ExpressionTEX11 [ NCBI-GEO ]   TEX11 [ EBI - ARRAY_EXPRESS ]   TEX11 [ SEEK ]   TEX11 [ MEM ]
Gene Expression Viewer (FireBrowse)TEX11 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)56159
GTEX Portal (Tissue expression)TEX11
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IYF3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IYF3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IYF3
Splice isoforms : SwissVarQ8IYF3
PhosPhoSitePlusQ8IYF3
Domains : Interpro (EBI)Spo22/ZIP4/TEX11    TPR-like_helical_dom    TPR_repeat   
Domain families : Pfam (Sanger)SPO22 (PF08631)   
Domain families : Pfam (NCBI)pfam08631   
Domain families : Smart (EMBL)TPR (SM00028)  
Conserved Domain (NCBI)TEX11
DMDM Disease mutations56159
Blocks (Seattle)TEX11
SuperfamilyQ8IYF3
Human Protein AtlasENSG00000120498
Peptide AtlasQ8IYF3
HPRD02256
IPIIPI00307536   IPI00646019   IPI00470495   
Protein Interaction databases
DIP (DOE-UCLA)Q8IYF3
IntAct (EBI)Q8IYF3
FunCoupENSG00000120498
BioGRIDTEX11
STRING (EMBL)TEX11
ZODIACTEX11
Ontologies - Pathways
QuickGOQ8IYF3
Ontology : AmiGOresolution of meiotic recombination intermediates  synaptonemal complex  central element  protein binding  meiotic gene conversion  male meiosis chromosome segregation  synaptonemal complex assembly  reciprocal meiotic recombination  male gonad development  fertilization  negative regulation of apoptotic process  chiasma assembly  
Ontology : EGO-EBIresolution of meiotic recombination intermediates  synaptonemal complex  central element  protein binding  meiotic gene conversion  male meiosis chromosome segregation  synaptonemal complex assembly  reciprocal meiotic recombination  male gonad development  fertilization  negative regulation of apoptotic process  chiasma assembly  
NDEx NetworkTEX11
Atlas of Cancer Signalling NetworkTEX11
Wikipedia pathwaysTEX11
Orthology - Evolution
OrthoDB56159
GeneTree (enSembl)ENSG00000120498
Phylogenetic Trees/Animal Genes : TreeFamTEX11
HOVERGENQ8IYF3
HOGENOMQ8IYF3
Homologs : HomoloGeneTEX11
Homology/Alignments : Family Browser (UCSC)TEX11
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTEX11 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TEX11
dbVarTEX11
ClinVarTEX11
1000_GenomesTEX11 
Exome Variant ServerTEX11
ExAC (Exome Aggregation Consortium)TEX11 (select the gene name)
Genetic variants : HAPMAP56159
Genomic Variants (DGV)TEX11 [DGVbeta]
DECIPHERTEX11 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTEX11 
Mutations
ICGC Data PortalTEX11 
TCGA Data PortalTEX11 
Broad Tumor PortalTEX11
OASIS PortalTEX11 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTEX11  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTEX11
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch TEX11
DgiDB (Drug Gene Interaction Database)TEX11
DoCM (Curated mutations)TEX11 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TEX11 (select a term)
intoGenTEX11
Cancer3DTEX11(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300311    309120   
Orphanet22774   
MedgenTEX11
Genetic Testing Registry TEX11
NextProtQ8IYF3 [Medical]
TSGene56159
GENETestsTEX11
Target ValidationTEX11
Huge Navigator TEX11 [HugePedia]
snp3D : Map Gene to Disease56159
BioCentury BCIQTEX11
ClinGenTEX11
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD56159
Chemical/Pharm GKB GenePA36450
Clinical trialTEX11
Miscellaneous
canSAR (ICR)TEX11 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTEX11
EVEXTEX11
GoPubMedTEX11
iHOPTEX11
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:41:16 CEST 2017

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