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TEX12 (testis expressed 12)

Identity

Alias (NCBI)-
HGNC (Hugo) TEX12
HGNC Previous nametestis expressed sequence 12
LocusID (NCBI) 56158
Atlas_Id 54872
Location 11q23.1  [Link to chromosome band 11q23]
Location_base_pair Starts at 112167372 and ends at 112172556 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)TEX12   11734
Cards
Entrez_Gene (NCBI)TEX12    testis expressed 12
Aliases
GeneCards (Weizmann)TEX12
Ensembl hg19 (Hinxton)ENSG00000150783 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000150783 [Gene_View]  ENSG00000150783 [Sequence]  chr11:112167372-112172556 [Contig_View]  TEX12 [Vega]
ICGC DataPortalENSG00000150783
TCGA cBioPortalTEX12
AceView (NCBI)TEX12
Genatlas (Paris)TEX12
SOURCE (Princeton)TEX12
Genetics Home Reference (NIH)TEX12
Genomic and cartography
GoldenPath hg38 (UCSC)TEX12  -     chr11:112167372-112172556 +  11q23.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TEX12  -     11q23.1   [Description]    (hg19-Feb_2009)
GoldenPathTEX12 - 11q23.1 [CytoView hg19]  TEX12 - 11q23.1 [CytoView hg38]
ImmunoBaseENSG00000150783
genome Data Viewer NCBITEX12 [Mapview hg19]  
OMIM605791   
Gene and transcription
Genbank (Entrez)AF285600 BC029506 BI561514
RefSeq transcript (Entrez)NM_031275
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TEX12
Alternative Splicing GalleryENSG00000150783
Gene ExpressionTEX12 [ NCBI-GEO ]   TEX12 [ EBI - ARRAY_EXPRESS ]   TEX12 [ SEEK ]   TEX12 [ MEM ]
Gene Expression Viewer (FireBrowse)TEX12 [ Firebrowse - Broad ]
GenevisibleExpression of TEX12 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)56158
GTEX Portal (Tissue expression)TEX12
Human Protein AtlasENSG00000150783-TEX12 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BXU0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BXU0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BXU0
Splice isoforms : SwissVarQ9BXU0
PhosPhoSitePlusQ9BXU0
Domains : Interpro (EBI)TEX12   
Domain families : Pfam (Sanger)TEX12 (PF15219)   
Domain families : Pfam (NCBI)pfam15219   
Conserved Domain (NCBI)TEX12
Blocks (Seattle)TEX12
PDB (RSDB)6HK8    6HK9   
PDB Europe6HK8    6HK9   
PDB (PDBSum)6HK8    6HK9   
PDB (IMB)6HK8    6HK9   
Structural Biology KnowledgeBase6HK8    6HK9   
SCOP (Structural Classification of Proteins)6HK8    6HK9   
CATH (Classification of proteins structures)6HK8    6HK9   
SuperfamilyQ9BXU0
Human Protein Atlas [tissue]ENSG00000150783-TEX12 [tissue]
Peptide AtlasQ9BXU0
HPRD12045
IPIIPI00010373   
Protein Interaction databases
DIP (DOE-UCLA)Q9BXU0
IntAct (EBI)Q9BXU0
BioGRIDTEX12
STRING (EMBL)TEX12
ZODIACTEX12
Ontologies - Pathways
QuickGOQ9BXU0
Ontology : AmiGOmeiotic DNA repair synthesis  central element  synaptonemal complex assembly  
Ontology : EGO-EBImeiotic DNA repair synthesis  central element  synaptonemal complex assembly  
NDEx NetworkTEX12
Atlas of Cancer Signalling NetworkTEX12
Wikipedia pathwaysTEX12
Orthology - Evolution
OrthoDB56158
GeneTree (enSembl)ENSG00000150783
Phylogenetic Trees/Animal Genes : TreeFamTEX12
HOGENOMQ9BXU0
Homologs : HomoloGeneTEX12
Homology/Alignments : Family Browser (UCSC)TEX12
Gene fusions - Rearrangements
Fusion : QuiverTEX12
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTEX12 [hg38]
dbVarTEX12
ClinVarTEX12
MonarchTEX12
1000_GenomesTEX12 
Exome Variant ServerTEX12
GNOMAD BrowserENSG00000150783
Varsome BrowserTEX12
Genomic Variants (DGV)TEX12 [DGVbeta]
DECIPHERTEX12 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTEX12 
Mutations
ICGC Data PortalTEX12 
TCGA Data PortalTEX12 
Broad Tumor PortalTEX12
OASIS PortalTEX12 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTEX12  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTEX12
Mutations and Diseases : HGMDTEX12
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TEX12
DgiDB (Drug Gene Interaction Database)TEX12
DoCM (Curated mutations)TEX12 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TEX12 (select a term)
intoGenTEX12
Cancer3DTEX12(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605791   
Orphanet
DisGeNETTEX12
MedgenTEX12
Genetic Testing Registry TEX12
NextProtQ9BXU0 [Medical]
GENETestsTEX12
Target ValidationTEX12
Huge Navigator TEX12 [HugePedia]
ClinGenTEX12
Clinical trials, drugs, therapy
MyCancerGenomeTEX12
Protein Interactions : CTD
Pharm GKB GenePA36451
PharosQ9BXU0
Clinical trialTEX12
Miscellaneous
canSAR (ICR)TEX12 (select the gene name)
HarmonizomeTEX12
DataMed IndexTEX12
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTEX12
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri Jan 1 18:40:55 CET 2021

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