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TEX12 (testis expressed 12)

Identity

Alias_namestestis expressed sequence 12
Other alias-
HGNC (Hugo) TEX12
LocusID (NCBI) 56158
Atlas_Id 54872
Location 11q23.1  [Link to chromosome band 11q23]
Location_base_pair Starts at 112167372 and ends at 112172556 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TEX12   11734
Cards
Entrez_Gene (NCBI)TEX12  56158  testis expressed 12
Aliases
GeneCards (Weizmann)TEX12
Ensembl hg19 (Hinxton)ENSG00000150783 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000150783 [Gene_View]  chr11:112167372-112172556 [Contig_View]  TEX12 [Vega]
ICGC DataPortalENSG00000150783
TCGA cBioPortalTEX12
AceView (NCBI)TEX12
Genatlas (Paris)TEX12
WikiGenes56158
SOURCE (Princeton)TEX12
Genetics Home Reference (NIH)TEX12
Genomic and cartography
GoldenPath hg38 (UCSC)TEX12  -     chr11:112167372-112172556 +  11q23.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TEX12  -     11q23.1   [Description]    (hg19-Feb_2009)
EnsemblTEX12 - 11q23.1 [CytoView hg19]  TEX12 - 11q23.1 [CytoView hg38]
Mapping of homologs : NCBITEX12 [Mapview hg19]  TEX12 [Mapview hg38]
OMIM605791   
Gene and transcription
Genbank (Entrez)AF285600 BC029506 BI561514 HQ447961
RefSeq transcript (Entrez)NM_031275
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TEX12
Cluster EST : UnigeneHs.524039 [ NCBI ]
CGAP (NCI)Hs.524039
Alternative Splicing GalleryENSG00000150783
Gene ExpressionTEX12 [ NCBI-GEO ]   TEX12 [ EBI - ARRAY_EXPRESS ]   TEX12 [ SEEK ]   TEX12 [ MEM ]
Gene Expression Viewer (FireBrowse)TEX12 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)56158
GTEX Portal (Tissue expression)TEX12
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BXU0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BXU0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BXU0
Splice isoforms : SwissVarQ9BXU0
PhosPhoSitePlusQ9BXU0
Domains : Interpro (EBI)TEX12   
Domain families : Pfam (Sanger)TEX12 (PF15219)   
Domain families : Pfam (NCBI)pfam15219   
Domain structure : Prodom (Prabi Lyon)PD396545 (PD396545)   
Conserved Domain (NCBI)TEX12
DMDM Disease mutations56158
Blocks (Seattle)TEX12
SuperfamilyQ9BXU0
Human Protein AtlasENSG00000150783
Peptide AtlasQ9BXU0
HPRD12045
IPIIPI00010373   
Protein Interaction databases
DIP (DOE-UCLA)Q9BXU0
IntAct (EBI)Q9BXU0
FunCoupENSG00000150783
BioGRIDTEX12
STRING (EMBL)TEX12
ZODIACTEX12
Ontologies - Pathways
QuickGOQ9BXU0
Ontology : AmiGOcentral element  synaptonemal complex assembly  
Ontology : EGO-EBIcentral element  synaptonemal complex assembly  
NDEx NetworkTEX12
Atlas of Cancer Signalling NetworkTEX12
Wikipedia pathwaysTEX12
Orthology - Evolution
OrthoDB56158
GeneTree (enSembl)ENSG00000150783
Phylogenetic Trees/Animal Genes : TreeFamTEX12
HOVERGENQ9BXU0
HOGENOMQ9BXU0
Homologs : HomoloGeneTEX12
Homology/Alignments : Family Browser (UCSC)TEX12
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTEX12 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TEX12
dbVarTEX12
ClinVarTEX12
1000_GenomesTEX12 
Exome Variant ServerTEX12
ExAC (Exome Aggregation Consortium)TEX12 (select the gene name)
Genetic variants : HAPMAP56158
Genomic Variants (DGV)TEX12 [DGVbeta]
DECIPHERTEX12 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTEX12 
Mutations
ICGC Data PortalTEX12 
TCGA Data PortalTEX12 
Broad Tumor PortalTEX12
OASIS PortalTEX12 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTEX12  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTEX12
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TEX12
DgiDB (Drug Gene Interaction Database)TEX12
DoCM (Curated mutations)TEX12 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TEX12 (select a term)
intoGenTEX12
Cancer3DTEX12(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605791   
Orphanet
MedgenTEX12
Genetic Testing Registry TEX12
NextProtQ9BXU0 [Medical]
TSGene56158
GENETestsTEX12
Huge Navigator TEX12 [HugePedia]
snp3D : Map Gene to Disease56158
BioCentury BCIQTEX12
ClinGenTEX12
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD56158
Chemical/Pharm GKB GenePA36451
Clinical trialTEX12
Miscellaneous
canSAR (ICR)TEX12 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTEX12
EVEXTEX12
GoPubMedTEX12
iHOPTEX12
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:40:45 CEST 2017

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