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TEX13A (testis expressed 13A)

Identity

Alias_namestestis expressed sequence 13A
Other alias-
HGNC (Hugo) TEX13A
LocusID (NCBI) 56157
Atlas_Id 46767
Location Xq22.3  [Link to chromosome band Xq22]
Location_base_pair Starts at 105218929 and ends at 105220693 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TEX13A   11735
Cards
Entrez_Gene (NCBI)TEX13A  56157  testis expressed 13A
Aliases
GeneCards (Weizmann)TEX13A
Ensembl hg19 (Hinxton)ENSG00000268629 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000268629 [Gene_View]  chrX:105218929-105220693 [Contig_View]  TEX13A [Vega]
ICGC DataPortalENSG00000268629
TCGA cBioPortalTEX13A
AceView (NCBI)TEX13A
Genatlas (Paris)TEX13A
WikiGenes56157
SOURCE (Princeton)TEX13A
Genetics Home Reference (NIH)TEX13A
Genomic and cartography
GoldenPath hg38 (UCSC)TEX13A  -     chrX:105218929-105220693 -  Xq22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TEX13A  -     Xq22.3   [Description]    (hg19-Feb_2009)
EnsemblTEX13A - Xq22.3 [CytoView hg19]  TEX13A - Xq22.3 [CytoView hg38]
Mapping of homologs : NCBITEX13A [Mapview hg19]  TEX13A [Mapview hg38]
OMIM300312   
Gene and transcription
Genbank (Entrez)AF285597 BC042547 BC108734 EU447013 HY018872
RefSeq transcript (Entrez)NM_001291277 NM_031274
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TEX13A
Cluster EST : UnigeneHs.567543 [ NCBI ]
CGAP (NCI)Hs.567543
Alternative Splicing GalleryENSG00000268629
Gene ExpressionTEX13A [ NCBI-GEO ]   TEX13A [ EBI - ARRAY_EXPRESS ]   TEX13A [ SEEK ]   TEX13A [ MEM ]
Gene Expression Viewer (FireBrowse)TEX13A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)56157
GTEX Portal (Tissue expression)TEX13A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BXU3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BXU3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BXU3
Splice isoforms : SwissVarQ9BXU3
PhosPhoSitePlusQ9BXU3
Domaine pattern : Prosite (Expaxy)ZF_RANBP2_1 (PS01358)    ZF_RANBP2_2 (PS50199)   
Domains : Interpro (EBI)TEX13    Znf_RanBP2   
Domain families : Pfam (Sanger)TEX13 (PF15186)   
Domain families : Pfam (NCBI)pfam15186   
Conserved Domain (NCBI)TEX13A
DMDM Disease mutations56157
Blocks (Seattle)TEX13A
SuperfamilyQ9BXU3
Human Protein AtlasENSG00000268629
Peptide AtlasQ9BXU3
HPRD02257
IPIIPI00010372   
Protein Interaction databases
DIP (DOE-UCLA)Q9BXU3
IntAct (EBI)Q9BXU3
FunCoupENSG00000268629
BioGRIDTEX13A
STRING (EMBL)TEX13A
ZODIACTEX13A
Ontologies - Pathways
QuickGOQ9BXU3
Ontology : AmiGOprotein binding  zinc ion binding  
Ontology : EGO-EBIprotein binding  zinc ion binding  
NDEx NetworkTEX13A
Atlas of Cancer Signalling NetworkTEX13A
Wikipedia pathwaysTEX13A
Orthology - Evolution
OrthoDB56157
GeneTree (enSembl)ENSG00000268629
Phylogenetic Trees/Animal Genes : TreeFamTEX13A
HOVERGENQ9BXU3
HOGENOMQ9BXU3
Homologs : HomoloGeneTEX13A
Homology/Alignments : Family Browser (UCSC)TEX13A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTEX13A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TEX13A
dbVarTEX13A
ClinVarTEX13A
1000_GenomesTEX13A 
Exome Variant ServerTEX13A
ExAC (Exome Aggregation Consortium)TEX13A (select the gene name)
Genetic variants : HAPMAP56157
Genomic Variants (DGV)TEX13A [DGVbeta]
DECIPHERTEX13A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTEX13A 
Mutations
ICGC Data PortalTEX13A 
TCGA Data PortalTEX13A 
Broad Tumor PortalTEX13A
OASIS PortalTEX13A [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDTEX13A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch TEX13A
DgiDB (Drug Gene Interaction Database)TEX13A
DoCM (Curated mutations)TEX13A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TEX13A (select a term)
intoGenTEX13A
Cancer3DTEX13A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300312   
Orphanet
MedgenTEX13A
Genetic Testing Registry TEX13A
NextProtQ9BXU3 [Medical]
TSGene56157
GENETestsTEX13A
Target ValidationTEX13A
Huge Navigator TEX13A [HugePedia]
snp3D : Map Gene to Disease56157
BioCentury BCIQTEX13A
ClinGenTEX13A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD56157
Chemical/Pharm GKB GenePA36452
Clinical trialTEX13A
Miscellaneous
canSAR (ICR)TEX13A (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTEX13A
EVEXTEX13A
GoPubMedTEX13A
iHOPTEX13A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:59:06 CEST 2017

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